Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,404,255 – 7,404,375 |
Length | 120 |
Max. P | 0.921436 |
Location | 7,404,255 – 7,404,375 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -42.97 |
Consensus MFE | -37.55 |
Energy contribution | -37.55 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.87 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7404255 120 - 27905053 UAUCGACUAGUGGGUAAAGUACAAGUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACCUCCUGCUGCUGAUUUGCAUAAUGCGCAUCUUUUAUCAGUCCGGACCACUGUCG ...((((.((((((((...)))..(..(((((((((.((((.(......(((.(((((....))))).)))..(((......)))...).))))..)))))))))..)...))))))))) ( -40.80) >DroSec_CAF1 20505 120 - 1 UAUCGACUAGUGGGAAAAGUACACGUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACUUCCUGCUGCUGAUGUGCCUAAUGCGCAUCUUUUAUCAGUCCGGACCACUGACG .......((((((..........((..((((((((((.((((....)).(((.(((((....))))).))))).)).(((((((.....))))))).))))))))..))..))))))... ( -39.40) >DroEre_CAF1 20052 120 - 1 UAUCGACUAGUGGGAAAAAUACUAAUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACCUCCUGCUGCUGGUGUGCCUGCUGCGCAUCUAUUAUCAGUCCGGACCACUGGUU ....(((((((((............(((.(((.((...(((((......(((.(((((....))))).)))((.((.((....)).)).))...)))))..)).))).)))))))))))) ( -43.10) >DroYak_CAF1 23865 120 - 1 UAUCGACUAGUGGGUAAAGUACUAAUCCUGAUGGAGCUGUGGAAAUCCAAGGUGGUGCUGUUGCACCUCCUGCUUCUGAUGUGCCUGCUGCGCAUCUACUAUCAGGCCGGACCACUGGCU ....(.((((((((((...)))....(((((((((((..(((....)))(((.(((((....))))).))))))...(((((((.....)))))))..)))))))).....)))))))). ( -48.60) >consensus UAUCGACUAGUGGGAAAAGUACAAAUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACCUCCUGCUGCUGAUGUGCCUAAUGCGCAUCUAUUAUCAGUCCGGACCACUGGCG ......((((((((.......).....((((((((((..(((....)))(((.(((((....))))).))))))...(((((((.....)))))))..)))))))......))))))).. (-37.55 = -37.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:19 2006