| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,403,029 – 7,403,120 |
| Length | 91 |
| Max. P | 0.528239 |
| Location | 7,403,029 – 7,403,120 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 61.90 |
| Mean single sequence MFE | -30.57 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.37 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7403029 91 - 27905053 UCCACUCGUGGUGACCACUGUGCUGGCUCUACUGGGCUGGCAAUUCUACCAACUGGUGAAGUUAUCUCAAAAUGUAAUGGCCCCCCAU----------------------UAU .......(.((((((.....(((..((((....))))..))).(((.(((....)))))))))))).).....(((((((....))))----------------------))) ( -28.50) >DroSec_CAF1 19279 91 - 1 UCCACUCGUGGUGACCACUGUGCUGGCUCUACUGGGCUGGCAGUUCUACCUACUGGUGAAGCUAUCUCAAAAUGUAAUGGCCCCCCAU----------------------UAU .......((((...))))...((..((((....))))..))((((.((((....)))).))))..........(((((((....))))----------------------))) ( -27.90) >DroEre_CAF1 18826 91 - 1 UCCACUCGUGGUGACCACGGUGCUGGCUCUACUGGGCUGGCAAUUCUACCUAUUGCUGAAGCUAUCUCGGCAUUCAAUGGACUCCCAG----------------------GAU (((..((((((...))))))(((..((((....))))..)))..((((.....((((((.......)))))).....))))......)----------------------)). ( -30.80) >DroYak_CAF1 22639 91 - 1 UCCACUCGUGGUGACCACGGGACUGGCCCUCCUAGGCUGGCAAUUCUACCUAUUGGUGAAGUUAUCCCAACAUUCGAUGGACUCCCAG----------------------GAG ((((.((((((...))))(((((..(((......)))..).((((.((((....)))).)))).)))).......))))))(((....----------------------))) ( -29.80) >DroMoj_CAF1 31550 107 - 1 ACCACUGGUGGUGGCCUGCAUGCUAACCUAUCUGGGCUGGUUCUACUAUCUGCUGGCCAAGCAGGGACGUG--CCGAGCA----UGAGCCCACACGGGGAUGGUUCACUAUUG ....((.(((..(((...((((((..((.....))..((((.......((((((.....)))))).....)--)))))))----)).)))..))).))(((((....))))). ( -35.90) >DroAna_CAF1 19401 91 - 1 UCCAGUUCAAGUGACUACCGCACUGGCCCUAUUGGGCUGGAUGUACUUUUUGAUGAUCAAGGUCUCGAAGGAUUCAAUGGAGUCCAAG----------------------GAG ((((((.((.(((.....))).(..((((....))))..).)).))).(((((.(((....))))))))((((((....))))))..)----------------------)). ( -30.50) >consensus UCCACUCGUGGUGACCACCGUGCUGGCCCUACUGGGCUGGCAAUUCUACCUACUGGUGAAGCUAUCUCAAAAUUCAAUGGACUCCCAG______________________GAG ..(((.....))).(((....((((((((....)))))))).....((((....))))...................)))................................. (-11.20 = -11.82 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:18 2006