Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,387,287 – 7,387,378 |
Length | 91 |
Max. P | 0.700357 |
Location | 7,387,287 – 7,387,378 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 77.54 |
Mean single sequence MFE | -21.76 |
Consensus MFE | -8.40 |
Energy contribution | -7.44 |
Covariance contribution | -0.96 |
Combinations/Pair | 1.50 |
Mean z-score | -1.98 |
Structure conservation index | 0.39 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7387287 91 + 27905053 UUGGCUGG--AAUGGCUCCAGCGGGCUCCAAUUUAAAGUUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUCCCAUUGUAUCGUUGACUCUCUU ...(((((--(.....))))))..............((((((..(((((((...((((.....)))).....))))).))..))))))..... ( -18.70) >DroSec_CAF1 3135 93 + 1 UCGAAGAGCAGAUGGCUCCACUAGGCUCCAAUUUAAAAGUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUCAUAUGGUAUCAUUGACUCUCUU ...(((((.((.(((..((....))..)))...............((((((....(((((((((.....)).))))))).))))))))))))) ( -18.80) >DroSim_CAF1 3927 93 + 1 UUGAAGAGCAGAUGGCUCCACUUGGCUCCCAUUUAAAGGUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUCUUAUGGUAUCAUUGACUCUCUU ...(((((.(((((((........(((.((.......)).))).......)))))(((((((((......))))))))).......))))))) ( -22.86) >DroEre_CAF1 3213 79 + 1 UUGAAGAGCAUAUGGCUCC----------AAUUUAAUGGUAUU-AUCAGUGCUAUUAUCAUAGGUAAUUUC-CAUGAUGCCA--AGCUCUCUU ....(((((...((((...----------....(((((((((.-....)))))))))((((.((......)-))))).))))--.)))))... ( -22.20) >DroYak_CAF1 4422 89 + 1 UUGAAGAGCAGAUGGCUCCAG-AGACUCCAUUUUAAUGGUAGUAAUCAGUGCUAUUAUCAUAGGUACUUUC-CAUUGUGCCA--AGCUCUCUU ....(((((.((((((.....-..(((((((....)))).))).......))))))......(((((....-....))))).--.)))))... ( -26.24) >consensus UUGAAGAGCAGAUGGCUCCAC_AGGCUCCAAUUUAAAGGUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUC_CAUGGUAUCAUUGACUCUCUU ...(((((..((((((..................................))))))......((((.(........))))).......))))) ( -8.40 = -7.44 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:17 2006