Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,380,818 – 7,380,912 |
Length | 94 |
Max. P | 0.699566 |
Location | 7,380,818 – 7,380,912 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -17.40 |
Consensus MFE | -12.60 |
Energy contribution | -13.08 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.29 |
Mean z-score | -1.63 |
Structure conservation index | 0.72 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7380818 94 - 27905053 CUGUGGUGGCAAUGUGACUGCUUC---CUCUCACUCGAAUUCCGGACAACCUAGCCCCCUCUUCCACCCUUGAAAACCCCUUUCCACGCCACUGUUU ..((((((((...((((..(....---)..)))).........((....))..)))...............((((.....))))...)))))..... ( -14.30) >DroSec_CAF1 56384 94 - 1 CUGUGGUGGCAAUGUGACUGCUUCCUCCUCUCACUCGAAUUCCGGGCAACCG---CCGCCCUUCCCCCCUUCAAAACCCCUUUCCACACCACAAUUU .(((((((.....((((..(.......)..)))).........((((.....---..)))).........................))))))).... ( -20.50) >DroSim_CAF1 59967 94 - 1 CUGUGGUGGCAAUGUGACUGCUUCCUCCUCUCGCACGAAUUCCGGGCAACCG---CCGCCCUUCCCCCCUUGAAAACCCCUUUCCACACCACUGUUU ..((((((((..(((((..(.......)..))))).......(((....)))---..))............((((.....))))..))))))..... ( -20.10) >DroEre_CAF1 60832 81 - 1 CUGUGGUGGCAAUGUGCCUGCU-----CCCUCACUCAAAUUCCGAGUAACCC----------U-CCCCCCUGAAAACCCCUUUCCACACCGCAGUUU (((((((((((.......))).-----.....((((.......)))).....----------.-......................))))))))... ( -17.60) >DroYak_CAF1 66107 82 - 1 CUGUGGUGGCAAUGUGACUGCUCCU--CCCUCACUCAAAUUCCGAGUAACCC-------------CCCCAUGAAAACCCCUUUCCACGCCACUGUUU ..(..(((((...(((.........--.....((((.......)))).....-------------......((((.....))))))))))))..).. ( -14.50) >consensus CUGUGGUGGCAAUGUGACUGCUUC___CUCUCACUCGAAUUCCGGGCAACCC___CC_C_CUUCCCCCCUUGAAAACCCCUUUCCACACCACUGUUU ..(((((((((.......)))...........(((((.....))))).......................................))))))..... (-12.60 = -13.08 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:15 2006