Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,378,715 – 7,378,818 |
Length | 103 |
Max. P | 0.986645 |
Location | 7,378,715 – 7,378,818 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 72.99 |
Mean single sequence MFE | -22.07 |
Consensus MFE | -13.40 |
Energy contribution | -13.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.61 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7378715 103 - 27905053 ACACA--------CAUACACACGCUACAUAGCUACGUAGUACGUAGUACGUACACACACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG .....--------......((((((((((.((((((.....)))))).................(((((....))))).)))))).))))(((((.......))))).... ( -28.10) >DroSim_CAF1 57856 80 - 1 ACACA--------CACACACACAC-----AGC------------------UACACUCACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG .....--------........(((-----(.(------------------((((.((.......(((((....)))))))))))).))))(((((.......))))).... ( -18.61) >DroYak_CAF1 63917 94 - 1 ---CCCCCGCAGACACACACACUU-----UGC---------UGUACAACGUACACUCACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG ---..............((((.((-----(((---------(((((...)))))..........(((((....)))))...)))))))))(((((.......))))).... ( -19.50) >consensus ACACA________CACACACACAC_____AGC__________GUA__ACGUACACUCACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG .........................................................((((...(((((....))))).(((((.(((....))).)))))..)))).... (-13.40 = -13.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:13 2006