Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,375,772 – 7,375,879 |
Length | 107 |
Max. P | 0.901233 |
Location | 7,375,772 – 7,375,879 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -14.05 |
Energy contribution | -13.43 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.32 |
Mean z-score | -2.31 |
Structure conservation index | 0.62 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7375772 107 - 27905053 GGAUCUCCCCAGCUUUUGGCCAUUAGUAAUUUC------UCUUGGCUUAUUGCA--CAUGUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUAAAAUUUAAGAUUUAAAAUGUA ((((((.....((....(((((..((......)------)..)))))(((((((--....)))))))))....(((((((......)))))))........))))))........ ( -24.60) >DroSec_CAF1 51379 107 - 1 GAAUCUCCCCAGCUUUUAGCCAUUGGUAAUUUC------CCUUGGCUUAAUGCA--CAUAUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUGAAAUUUAAGAUUUAAAAUUUA ((((((.....((....(((((..((......)------)..)))))....)).--..(((((....))))).(((((((......)))))))........))))))........ ( -25.20) >DroSim_CAF1 54938 109 - 1 GAAUCUCCCCAGCUUUCAGCCAUUGGUAAUUUC------UCUUGGCUUAAUGCACACAUAUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUCAAAUUUAAGAUUUAAAAUGUA ((((((.....((.((.(((((..((......)------)..))))).)).)).....(((((....)))))((((((((......)))))))).......))))))........ ( -27.00) >DroEre_CAF1 55291 106 - 1 GAAUCUCCCCAGCUUUCAGCCAUCAGUUAUUUCCAUUUUUCUUGGUUUAACGCA--CAUAUGUAAUAAUAUGGAAACGUACCAAAAUUCAUUUAAAAUGU-------ACAUUUCA ...........((.....)).....((((...(((.......)))..))))...--(((((......)))))((((.((((.................))-------)).)))). ( -13.43) >consensus GAAUCUCCCCAGCUUUCAGCCAUUAGUAAUUUC______UCUUGGCUUAAUGCA__CAUAUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUAAAAUUUAAGAUUUAAAAUGUA ...........((....(((((....................)))))....)).....(((((....))))).(((((((......)))))))...................... (-14.05 = -13.43 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:12 2006