Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,372,939 – 7,373,033 |
Length | 94 |
Max. P | 0.603345 |
Location | 7,372,939 – 7,373,033 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.66 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -21.73 |
Energy contribution | -22.98 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.05 |
Mean z-score | -1.53 |
Structure conservation index | 0.74 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7372939 94 + 27905053 UUGAGAUGCCACCACAAACUGUCAGCGCAUCUGGCGGUUGCGACUGAUGGAUAUCGGGGAAGGACAAGGAUUCGGAAAUGGAAAUGGAGACGG-A ........((.(((....(((((((((((.(.....).)))).)))))))...(((((............)))))...)))....(....)))-. ( -21.00) >DroSec_CAF1 48665 94 + 1 UUGAGAUGCCACCGCAAACUGUCAGCGCAUCUGGCGGAUGCGACUGAUGGGUAUCGCGGAAGGACAAGGAUUCGGAGAUGGAAAUGGAGACGG-A ........(((((((...(((((((((((((.....)))))).))))))).....))))..(((......))).....)))...((....)).-. ( -29.10) >DroEre_CAF1 52405 89 + 1 UUGAGAUGCCACCACAAAAUGUCAGCGCAUCUGGCGGAUGCGACUGAUGGGUAUCGGAGAU------GGAGACGUAGACAGAUCCGGGCACGGAA ....((((((..........(((((((((((.....)))))).))))).))))))(...((------(....)))...)...((((....)))). ( -31.80) >DroYak_CAF1 58143 95 + 1 UUGAGAUGCCACCACAAAAUGUCAGCGCAUCUGGCGGAUGCGACUGAUGGGUAUCGGAGAUGGAGAUGGAGACGUAGACAGAUCCGGGCACGGAA ......(((((((.((.....((((((((((.....)))))).)))))))))..((((..((...(((....)))...))..))))))))..... ( -36.00) >consensus UUGAGAUGCCACCACAAAAUGUCAGCGCAUCUGGCGGAUGCGACUGAUGGGUAUCGGAGAAGGACAAGGAGACGGAGACAGAAACGGACACGG_A ....((((((..........(((((((((((.....)))))).))))).))))))...........................((((....)))). (-21.73 = -22.98 + 1.25)
Location | 7,372,939 – 7,373,033 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 83.66 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -17.25 |
Energy contribution | -16.75 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.16 |
Mean z-score | -1.56 |
Structure conservation index | 0.74 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7372939 94 - 27905053 U-CCGUCUCCAUUUCCAUUUCCGAAUCCUUGUCCUUCCCCGAUAUCCAUCAGUCGCAACCGCCAGAUGCGCUGACAGUUUGUGGUGGCAUCUCAA .-..(((.((((...(.............((((.......))))....((((.((((.(.....).))))))))..)...)))).)))....... ( -17.20) >DroSec_CAF1 48665 94 - 1 U-CCGUCUCCAUUUCCAUCUCCGAAUCCUUGUCCUUCCGCGAUACCCAUCAGUCGCAUCCGCCAGAUGCGCUGACAGUUUGCGGUGGCAUCUCAA .-...........................((((...((((((.((...((((.((((((.....))))))))))..)))))))).))))...... ( -25.50) >DroEre_CAF1 52405 89 - 1 UUCCGUGCCCGGAUCUGUCUACGUCUCC------AUCUCCGAUACCCAUCAGUCGCAUCCGCCAGAUGCGCUGACAUUUUGUGGUGGCAUCUCAA ....(((((((((..((..........)------)..))))..(((((((((.((((((.....)))))))))).....)).))))))))..... ( -25.70) >DroYak_CAF1 58143 95 - 1 UUCCGUGCCCGGAUCUGUCUACGUCUCCAUCUCCAUCUCCGAUACCCAUCAGUCGCAUCCGCCAGAUGCGCUGACAUUUUGUGGUGGCAUCUCAA ....(((((((((..((................))..))))..(((((((((.((((((.....)))))))))).....)).))))))))..... ( -25.19) >consensus U_CCGUCCCCAGAUCCAUCUACGAAUCCUUGUCCAUCCCCGAUACCCAUCAGUCGCAUCCGCCAGAUGCGCUGACAGUUUGUGGUGGCAUCUCAA ....(((.((((((........))))......................((((.((((((.....))))))))))........)).)))....... (-17.25 = -16.75 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:10 2006