Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,367,903 – 7,368,005 |
Length | 102 |
Max. P | 0.825354 |
Location | 7,367,903 – 7,368,005 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -31.03 |
Consensus MFE | -26.46 |
Energy contribution | -26.53 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.75 |
Structure conservation index | 0.85 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7367903 102 + 27905053 CAUUCGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACGAUUGGCAUUCAACAAUGCCGCAACAAUUCA------------- ......(((((((...)))))))........(((((((....)).)))))........(((((.(......)...((((((....)))))))))))......------------- ( -30.60) >DroSec_CAF1 43714 99 + 1 CAUUCGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACGAUUGGCAUUCAACAAUGCCGU---AAUUCA------------- ......(((((((...)))))))(((((((((((((((....)).)))))..........(((.((((....))))))).........))).)---))))..------------- ( -28.50) >DroEre_CAF1 47401 111 + 1 CAUUUGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACCAUUCGCAUUCAACAAUGCCGC---AAUUCAGCAAUCAA-GCCG ..(((((((((....((((((((..((..(.(((((((....)).))))).)..))..))))).............(((((....))))).))---).....))))))))-)... ( -31.30) >DroYak_CAF1 48895 115 + 1 CAUUUGAUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAGCCAUUGGCAUUCAACAAUGCCGCAACAAUUCAGCAAUCGACAACG ...((((((((((..((.(((((..((..(.(((((((....)).))))).)..))..))))).))...))....((((((....))))))...........))))))))..... ( -33.70) >consensus CAUUCGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACCAUUGGCAUUCAACAAUGCCGC___AAUUCA_____________ ......(((((((...))))))).....((((((((((....)).)))))..........(((.((((....))))))).........)))........................ (-26.46 = -26.53 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:08 2006