Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,366,539 – 7,366,641 |
Length | 102 |
Max. P | 0.944836 |
Location | 7,366,539 – 7,366,641 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 71.35 |
Mean single sequence MFE | -22.52 |
Consensus MFE | -6.40 |
Energy contribution | -6.56 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.25 |
Mean z-score | -2.09 |
Structure conservation index | 0.28 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7366539 102 + 27905053 AGAUUCAAUCGA-------ACCAAUUGCGCACACCAUU-AUGCUGUGGAUCUCUUCCAGAAUCCAACAAUUAAGCAUAAAUUAUUGAUUCAAGGCGACUUA--UGUGU---GCAU ............-------......((((((((...((-(((((.(((((.((.....))))))).......)))))))...........(((....))).--)))))---))). ( -25.10) >DroSec_CAF1 42372 104 + 1 AGGUUCAAUCGA-------ACCAAUUGCGCACACCAUU-AUGCUGUGGAUCUCUUCCAGAAUCCAACAAUUAAGCAUAAAUUAUUGAUUCAAGGCGACUUAUAUGUGU---GCAU .(((((....))-------)))...((((((((...((-(((((.(((((.((.....))))))).......)))))))...........(((....)))...)))))---))). ( -31.70) >DroEre_CAF1 46057 102 + 1 AAAUUCAGUUGC-------ACGAGUUGCGCACAUUAUU-AUAAUGUGAAUCUCUUCCAGAAUCCAGCAAUUAAGCAUAAAUUAUUGAUUCAAGGCGACUUA--UGUGC---GCAU .......((.((-------(((((((((.(((((((..-.)))))))...........(((((.((.((((.......)))).)))))))...))))))).--.))))---)).. ( -23.40) >DroWil_CAF1 35560 109 + 1 AAAUUGAUUUUAAUGAUUGAUCUAUUGCCUAGCCUAUUGAUUUUC----GCCAACGCAAAAUCCACAUUUUAUAUUUAUAGGAUAGAUUCAUGCAUACAUA--UAUUUAUUCUAU ..((..(((.....)))..)).................((((((.----((....))))))))..............(((((((((((..(((....))).--.))))))))))) ( -14.70) >DroYak_CAF1 47478 98 + 1 AGAUUCAGUUGA-------AAUAAUUGCGCACAUUAUU-AUAUUC----UCUCUUCCAGAAUCCAGCAAUUAAGCAUAAAUUAUUGAUUCAAGGCGACUUA--UGUGU---GCAU ...(((....))-------).....(((((((((....-......----.........(((((.((.((((.......)))).)))))))(((....))))--)))))---))). ( -17.70) >consensus AGAUUCAAUUGA_______ACCAAUUGCGCACACUAUU_AUACUGUG_AUCUCUUCCAGAAUCCAACAAUUAAGCAUAAAUUAUUGAUUCAAGGCGACUUA__UGUGU___GCAU .........................((((((((.........................(((((....((((.......))))...)))))(((....)))...)))))...))). ( -6.40 = -6.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:07 2006