Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,365,244 – 7,365,345 |
Length | 101 |
Max. P | 0.988386 |
Location | 7,365,244 – 7,365,345 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.40 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -15.31 |
Energy contribution | -15.87 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.43 |
Structure conservation index | 0.56 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.958935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7365244 101 + 27905053 GCCUAUCAUAUCGGUUCUUGUCAUCAGUGUCAAUGGGCUUAAUUAAAAUAGAUGUGCAAUCGACCAUUGACACAUUGACAAAUUCGAAUGAUCUUGAAUGC------------------- ....(((((.((((...((((((...((((((((((..............(((.....)))..))))))))))..))))))..))))))))).........------------------- ( -28.19) >DroSec_CAF1 41120 101 + 1 GACUAUCAUAUCUGUUCUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAUAGACAUGCAAUCGACCAGUGACACAUUGACAAAUUCGAAUGAUCUUUAAUGC------------------- ....(((((.((.(...((((((...((((((.((((((((.......)))))...(....).))).))))))..))))))...)))))))).........------------------- ( -20.60) >DroSim_CAF1 46650 101 + 1 GCAUAUCAUAUCUGGUAUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAUAGACAUGCAAUCGACCAUUGACACAUUGACAAAUUCGAAUGAUCUUUAAUGC------------------- (((((((((.((..((.((((((...(((((((((((((((.......)))))...(....).))))))))))..))))))))..))))))).....))))------------------- ( -27.70) >DroEre_CAF1 44747 118 + 1 GCUUAUCGUAUCUGUUCUCGUCAUCAGUGUCAAUGGGUUUAAUUAAAAA-GCCGUGCGAUUGU-CAAUGACACAUUGACAAAUUUGAAUGCUCUUUAAUGCAGUCUCUGCACAAAACGAC .....((((..........................(((((.......))-)))(((((.((((-(((((...)))))))))....((.(((........))).))..)))))...)))). ( -26.20) >DroYak_CAF1 46136 118 + 1 GCUUAUCGUAUCUGUUCUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAU-ACCGUGCAAUUGG-CACUGACACUUUGACAAAUUUGAAUGAUCUUUAAUGCAGUCUGUGCAUUAAACGAC .....(((((((.((((((((((..(((((((...(((...........-)))((((.....)-)))))))))).))))))....)))))))..((((((((.....)))))))))))). ( -33.40) >consensus GCCUAUCAUAUCUGUUCUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAUAGACGUGCAAUCGACCAUUGACACAUUGACAAAUUCGAAUGAUCUUUAAUGC___________________ ....(((((.((.....((((((...((((((.(((...........................))).))))))..))))))....)))))))............................ (-15.31 = -15.87 + 0.56)
Location | 7,365,244 – 7,365,345 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.40 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -17.76 |
Energy contribution | -19.08 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.10 |
Mean z-score | -2.60 |
Structure conservation index | 0.64 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7365244 101 - 27905053 -------------------GCAUUCAAGAUCAUUCGAAUUUGUCAAUGUGUCAAUGGUCGAUUGCACAUCUAUUUUAAUUAAGCCCAUUGACACUGAUGACAAGAACCGAUAUGAUAGGC -------------------.........((((((((..(((((((..((((((((((.(.......................).))))))))))...)))))))...))).))))).... ( -27.00) >DroSec_CAF1 41120 101 - 1 -------------------GCAUUAAAGAUCAUUCGAAUUUGUCAAUGUGUCACUGGUCGAUUGCAUGUCUAUUUUAAUUAAACCCAUUGACACUGAUGACAAGAACAGAUAUGAUAGUC -------------------.........(((((((...(((((((..((((((.(((..(((((...........)))))....))).))))))...)))))))....)).))))).... ( -21.40) >DroSim_CAF1 46650 101 - 1 -------------------GCAUUAAAGAUCAUUCGAAUUUGUCAAUGUGUCAAUGGUCGAUUGCAUGUCUAUUUUAAUUAAACCCAUUGACACUGAUGACAAUACCAGAUAUGAUAUGC -------------------((((.....(((((((....((((((..((((((((((..(((((...........)))))....))))))))))...)))))).....)).))))))))) ( -26.00) >DroEre_CAF1 44747 118 - 1 GUCGUUUUGUGCAGAGACUGCAUUAAAGAGCAUUCAAAUUUGUCAAUGUGUCAUUG-ACAAUCGCACGGC-UUUUUAAUUAAACCCAUUGACACUGAUGACGAGAACAGAUACGAUAAGC ((((((((((((((...))))((((((((((........(((((((((...)))))-)))).......))-))))))))......((((......))))......))))).))))).... ( -30.36) >DroYak_CAF1 46136 118 - 1 GUCGUUUAAUGCACAGACUGCAUUAAAGAUCAUUCAAAUUUGUCAAAGUGUCAGUG-CCAAUUGCACGGU-AUUUUAAUUAAACCCAUUGACACUGAUGACAAGAACAGAUACGAUAAGC (((((((((((((.....))))))))............(((((((.((((((((((-(.....))))(((-...........)))...)))))))..))))))).......))))).... ( -33.40) >consensus ___________________GCAUUAAAGAUCAUUCGAAUUUGUCAAUGUGUCAAUGGUCGAUUGCACGUCUAUUUUAAUUAAACCCAUUGACACUGAUGACAAGAACAGAUAUGAUAAGC ............................(((((((...(((((((..((((((((((..(((((...........)))))....))))))))))...)))))))....)).))))).... (-17.76 = -19.08 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:06 2006