Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,364,560 – 7,364,665 |
Length | 105 |
Max. P | 0.734195 |
Location | 7,364,560 – 7,364,665 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 84.99 |
Mean single sequence MFE | -37.94 |
Consensus MFE | -24.07 |
Energy contribution | -25.23 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.15 |
Mean z-score | -2.27 |
Structure conservation index | 0.63 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7364560 105 - 27905053 AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCCGACAGACCCACCAUUGUGGUGGUGGUGGCUACACCCAUACCCGAAUGUCUGUGGGUUGAAUGCGCUUCAUG .........(((((......)))))(((.(((((.(((((((((((.....))))).((((....))))...........))))))))))).))).......... ( -40.80) >DroSec_CAF1 40437 100 - 1 AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCCACCAUUGUGGCGAUGGUGGUGGUGGUGGCUACACCCAUCCCCGAAUGUCUGUGGGUUGAAUGCGCU----- .........(((((......)))))(((.(((((((((((.(((.(((((..(((((....)))))..))))).)))))))...))))))).))).....----- ( -40.20) >DroSim_CAF1 45967 100 - 1 AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCCACCAUUGUGGCGAUGGUGGUGGUGGUGGCUACACCCAUCCCCGAAUGUCUGUGGGUUGAAUGCGCU----- .........(((((......)))))(((.(((((((((((.(((.(((((..(((((....)))))..))))).)))))))...))))))).))).....----- ( -40.20) >DroEre_CAF1 44086 99 - 1 AAAAGAUUACGCCAUAAAGUUGGUGGUUGGACCC--CAGAGCCACCAUUAUGGUGGUUG---G-UCACCCAUCUCCGAAUGUCUGUGGGUUGAAUGCGCUCCAUG .........(((((......)))))(((.(((((--((((((((((.....))))))((---(-....)))..........)))).))))).))).......... ( -32.80) >DroYak_CAF1 45428 99 - 1 AAAAGAUUACGCCAUAAAGUUGGUGGUUGGACCC--CAGACCCGCCAUUGUGGUGGUGG---G-UCACCCAUCUCCGAAUGUCUGUGGGUUGAAUGCGCUCCAUG .........(((((......)))))..((((.(.--((((((((((((....)))))))---)-))((((((............))))))....)).).)))).. ( -35.70) >consensus AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCC__CAGAGCCGCCAUUGUGGUGGUGGUGGCUACACCCAUCCCCGAAUGUCUGUGGGUUGAAUGCGCU_CAUG .........(((((......)))))(((.((((((.((((........(((((..(((.......))))))))........)))))))))).))).......... (-24.07 = -25.23 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:04 2006