Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,363,364 – 7,363,457 |
Length | 93 |
Max. P | 0.500000 |
Location | 7,363,364 – 7,363,457 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 85.84 |
Mean single sequence MFE | -9.20 |
Consensus MFE | -7.24 |
Energy contribution | -7.20 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.79 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7363364 93 + 27905053 ACACCGUGAAUAUUCGCUCAGAAAAGCCACAAAAAACAAAAAAAAAAAAGGAAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUAUUA .....((((....))))..((((((........................((....))............(((.....)))...)))))).... ( -6.40) >DroSec_CAF1 39263 91 + 1 ACACCGUGAUUAUUCGUUCAAAAAAGCCACAAAAAACAAA--AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUAAAAUUUUCUAUUA .....(((.......(((......))).............--.......((....))..........)))....................... ( -7.30) >DroSim_CAF1 44786 87 + 1 ACACCGUG-UUAUUCGUUCAGA-AAGCCACAA--AACAAA--AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUAUUA .....(((-((((((.....))-)........--......--.......((....)).......))))))....................... ( -11.90) >DroEre_CAF1 42901 81 + 1 ACACCGUGAUUAUUCGCACAAAAAAGCCAC------------AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGCAAUUUUCUCUUU .....((((....))))........((...------------.......((....)).........((......))...))............ ( -9.10) >DroYak_CAF1 44204 80 + 1 ACAGCGUGAUUAUUCGCUCAGAAAAGCCA-------------AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUCUUU ..((((........)))).((((((....-------------.......((....))............(((.....)))...)))))).... ( -11.30) >consensus ACACCGUGAUUAUUCGCUCAGAAAAGCCACAA__AACAAA__AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUAUUA .....(((.......(((......)))......................((....))..........)))....................... ( -7.24 = -7.20 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:03 2006