Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,362,839 – 7,362,950 |
Length | 111 |
Max. P | 0.638224 |
Location | 7,362,839 – 7,362,950 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.61 |
Mean single sequence MFE | -31.69 |
Consensus MFE | -10.40 |
Energy contribution | -11.74 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.12 |
Mean z-score | -2.34 |
Structure conservation index | 0.33 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7362839 111 - 27905053 A---ACCAUUUAAAGUUGCUCAAUUUGCUUCGGAGCUUUGGUGCUUCGGUGCUUCGG-AGCUAAGGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG .---.((((((.....(((((.....((((((((((.((((....)))).)))))))-)))...((((((.....)))))-----)...............)))))........)))))) ( -37.62) >DroSec_CAF1 38735 103 - 1 A---ACCAUUUAAAGUUGCUCAAUUUGCUACGGAGCUUUGGUGC--------UUCGG-AGCUAAAGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG .---.((((((.....(((((..........(((((((((((.(--------....)-.)))))))).)))......(((-----((.......)))))..)))))........)))))) ( -32.82) >DroSim_CAF1 44255 111 - 1 A---ACCAUUUAAAGUUGCUCAAUUUGCUACGGAGCUUUGGUGCUUCGGUGCUUCGG-AGCUAAAGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG .---...........(..(((.........((((((......))))))(((((((((-(((....)).)))......(((-----((.......))))).))))))).......)))..) ( -36.90) >DroEre_CAF1 42414 87 - 1 A---ACCAUUUAAAGUUGUUCAAUUUGC------------------------UUCGG-AGCUAAAGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG .---.((((......((((((....(((------------------------(((((-(((....)).)))......(((-----((.......))))).))))))....)))))))))) ( -25.50) >DroYak_CAF1 43693 87 - 1 A---ACCAUUUAAAGUUGUUCAAUUUGC------------------------UUCGG-AGCUAAAGGAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG .---.((((......((((((....(((------------------------(((((-(.(.....).)))......(((-----((.......))))).))))))....)))))))))) ( -22.80) >DroAna_CAF1 41522 101 - 1 AAAAACCAUUUAAAGUUGCUCAAUUUGCUGGAAA-C-----GGCAACGG--CAACGGCAAUGAAAGCAUCCUUCAGGUGGUAGCACAAAAAGGCUGG--AGGAGCACGGA---------G .....((.......(((((.....((((((....-)-----)))))((.--...)))))))....((.(((((((((((....))).......))))--))))))..)).---------. ( -34.51) >consensus A___ACCAUUUAAAGUUGCUCAAUUUGCU_CGGA_C_____UGC________UUCGG_AGCUAAAGCAUCCUUCAGGUGC_____CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG .....((((((.....(((((...(((((...............................((.(((....))).))(((......))).......))))).)))))........)))))) (-10.40 = -11.74 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:02 2006