Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,362,564 – 7,362,696 |
Length | 132 |
Max. P | 0.797053 |
Location | 7,362,564 – 7,362,673 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 84.53 |
Mean single sequence MFE | -23.36 |
Consensus MFE | -14.98 |
Energy contribution | -15.14 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.98 |
Structure conservation index | 0.64 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7362564 109 - 27905053 GAC-AAAACUUUUGGCUUAUUUCUCUAUUGCCAGAGAGAUGUCAUAAAGUUCAGUCCGUAACACAAAUAGAGCAAUUUUCGCUUUGAAAAAAAUCGAAAAAAAUGGGUUG (((-..((((((((((..((((((((......)))))))))))).))))))..)))...........((((((.......)))))).....((((.(......).)))). ( -22.40) >DroSec_CAF1 38460 109 - 1 GACCAAAACUUUUGGCGUAUUUCUCUAUUGUUAGAGAGAUGUCAUAAAGUUCAGUCCAUAACACAAAUAGAGCAAUUUUCACUUUGAAAAAAAUUGAAA-AAAUGGCUUG (((...((((((((((((...((((((....)))))).)))))).))))))..))).............((((..((((((.(((.....))).)))))-)....)))). ( -26.00) >DroSim_CAF1 43980 109 - 1 GACCAAAACUUUUGGCGUUUUUCUCUAUUGCCAGAGAAAUGUCAUAAAGUUCAGUCCAUAACACAAAUAGAGCAAUUUUCACUUUGAAAAAAAUCGAAA-AAAUGGCUUG (((...((((((((((((((((((........)))))))))))).))))))..))).............((((.(((((...(((((......))))))-)))).)))). ( -24.80) >DroEre_CAF1 42148 100 - 1 -ACAAAAACUUUUGGCAUAUUUCUCUAUCGCCGGAGAGAUGUCAUAAAGCUUAGUCUAUUAGGCAAAUAGAGCAAUUUUCGCUUGGAAAAAA---------AAUGGCUUG -............(((((((((((((......))))))))))(((...((((((....)))))).....((((.......))))........---------.)))))).. ( -19.60) >DroYak_CAF1 43422 101 - 1 -ACAAAAAUUUUUGGCAUAUUUCUCUAUCGCCAGAGAGAUGUCAUAAAGUUUAGUCUAUGAGCCAAAUAGAGCAAUUUUCGCUUGGAAAAAA-U-------CAUGACUUG -....(((((((((((((...(((((......))))).)))))).)))))))((((.((((........((((.......))))........-)-------))))))).. ( -23.99) >consensus GACAAAAACUUUUGGCAUAUUUCUCUAUUGCCAGAGAGAUGUCAUAAAGUUCAGUCCAUAACACAAAUAGAGCAAUUUUCGCUUUGAAAAAAAU_GAAA_AAAUGGCUUG (((...(((((((((((..(((((((......)))))))))))).))))))..)))...................(((((.....))))).................... (-14.98 = -15.14 + 0.16)
Location | 7,362,604 – 7,362,696 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 89.67 |
Mean single sequence MFE | -19.48 |
Consensus MFE | -15.10 |
Energy contribution | -15.26 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.16 |
Mean z-score | -1.80 |
Structure conservation index | 0.78 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.797053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7362604 92 - 27905053 AAGUGAAAACUUUUUAUUUCGUCGAC-AAAACUUUUGGCUUAUUUCUCUAUUGCCAGAGAGAUGUCAUAAAGUUCAGUCCGUAACACAAAUAG ((((....))))...........(((-..((((((((((..((((((((......)))))))))))).))))))..))).............. ( -20.00) >DroSec_CAF1 38499 93 - 1 AAGUGAAAACUUUUUAUUUCGUCGACCAAAACUUUUGGCGUAUUUCUCUAUUGUUAGAGAGAUGUCAUAAAGUUCAGUCCAUAACACAAAUAG ((((....))))...........(((...((((((((((((...((((((....)))))).)))))).))))))..))).............. ( -20.60) >DroSim_CAF1 44019 93 - 1 AAGUGAAAACUUUUUAUUUCGUCGACCAAAACUUUUGGCGUUUUUCUCUAUUGCCAGAGAAAUGUCAUAAAGUUCAGUCCAUAACACAAAUAG ((((....))))...........(((...((((((((((((((((((........)))))))))))).))))))..))).............. ( -20.50) >DroEre_CAF1 42179 92 - 1 AAGUAAAAACUUUUUAUUUCGUC-ACAAAAACUUUUGGCAUAUUUCUCUAUCGCCGGAGAGAUGUCAUAAAGCUUAGUCUAUUAGGCAAAUAG (((((((.....))))))).(((-(.((....)).))))((((((((((......))))))))))......((((((....))))))...... ( -16.30) >DroYak_CAF1 43454 92 - 1 AAGUGAAAACUUUUUAUUUCGUC-ACAAAAAUUUUUGGCAUAUUUCUCUAUCGCCAGAGAGAUGUCAUAAAGUUUAGUCUAUGAGCCAAAUAG ((((....))))...........-.........((((((.(((((((((......)))))))))(((((..........)))))))))))... ( -20.00) >consensus AAGUGAAAACUUUUUAUUUCGUCGACAAAAACUUUUGGCAUAUUUCUCUAUUGCCAGAGAGAUGUCAUAAAGUUCAGUCCAUAACACAAAUAG ((((....))))...........(((...(((((((((((..(((((((......)))))))))))).))))))..))).............. (-15.10 = -15.26 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:01 2006