Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,362,143 – 7,362,233 |
Length | 90 |
Max. P | 0.982271 |
Location | 7,362,143 – 7,362,233 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 77.33 |
Mean single sequence MFE | -19.64 |
Consensus MFE | -11.03 |
Energy contribution | -11.68 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.24 |
Mean z-score | -2.66 |
Structure conservation index | 0.56 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7362143 90 + 27905053 UAUUUUUCAAUUGUACAACUGUGCUGGUUUU--------------CGUAAACAAAAAAUUAAUUCAAUCUA-------ACUUUUGUUGCCACUUGGCACCAGCAAA-AAGUU ................((((.(((((((...--------------....(((((((...............-------..)))))))(((....))))))))))..-.)))) ( -20.03) >DroGri_CAF1 37120 106 + 1 ----UUUCGAAUGUGUAAUUGUACUAAGCUUAUAGCUUAAGCUGAAGUAAGGCAACAGCAAAUUUGAUAUGGAAAAACCCUUUUUUUGC-AAAUGCUGCCAGAAAU-AAUUU ----((((.............((((.((((((.....))))))..)))).((((.(((((((...((...((......)).)).)))))-...)).)))).)))).-..... ( -21.80) >DroSec_CAF1 38041 90 + 1 UAUUUUUCAAUUGUACAACUGUGCUGGUUUU--------------CGUAAACAAAAAAUUAAUUCAAUCUA-------ACUUUUGUUGCCACUUGGCACCAGCAAA-AAGUU ................((((.(((((((...--------------....(((((((...............-------..)))))))(((....))))))))))..-.)))) ( -20.03) >DroSim_CAF1 43561 90 + 1 UAUUUUUCAAUUGUACAACUGUGCUGGUUUU--------------CGUAAACAAAAAAUUAAUUCAAUCUA-------ACUUUUGUUGCCACUUGGCACCAGCAAA-AAGUU ................((((.(((((((...--------------....(((((((...............-------..)))))))(((....))))))))))..-.)))) ( -20.03) >DroEre_CAF1 41726 90 + 1 UAUUUUUCAAUUGUAUAUAU-UGUUGGUUUU--------------CAUAAACAAAAAAUUAAUUCAAUCUA-------ACUUUUGUUGCCACUUGGCACCAGCAAAAAAGUU ...................(-(((((((...--------------....(((((((...............-------..)))))))(((....)))))))))))....... ( -16.03) >DroYak_CAF1 42997 89 + 1 UAUUUUUCAAUUGUAUAACUGUGCUGGUUUU--------------CA-AAACAAAAAAUUAAUUCAAUCUA-------ACUUUUGUUGCCACUUGGCACCAGCAAA-AAGUU ................((((.(((((((...--------------..-.(((((((...............-------..)))))))(((....))))))))))..-.)))) ( -19.93) >consensus UAUUUUUCAAUUGUACAACUGUGCUGGUUUU______________CGUAAACAAAAAAUUAAUUCAAUCUA_______ACUUUUGUUGCCACUUGGCACCAGCAAA_AAGUU .....................(((((((.....................(((((((........................)))))))(((....))))))))))........ (-11.03 = -11.68 + 0.64)
Location | 7,362,143 – 7,362,233 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.33 |
Mean single sequence MFE | -19.99 |
Consensus MFE | -10.51 |
Energy contribution | -11.90 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.11 |
Mean z-score | -2.28 |
Structure conservation index | 0.53 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7362143 90 - 27905053 AACUU-UUUGCUGGUGCCAAGUGGCAACAAAAGU-------UAGAUUGAAUUAAUUUUUUGUUUACG--------------AAAACCAGCACAGUUGUACAAUUGAAAAAUA .....-..((((((((((....)))(((((((((-------(((......)))).))))))))....--------------...)))))))(((((....)))))....... ( -21.30) >DroGri_CAF1 37120 106 - 1 AAAUU-AUUUCUGGCAGCAUUU-GCAAAAAAAGGGUUUUUCCAUAUCAAAUUUGCUGUUGCCUUACUUCAGCUUAAGCUAUAAGCUUAGUACAAUUACACAUUCGAAA---- .....-.((((.(((((((...-(((((.....((.....))........)))))))))))).((((..((((((.....)))))).)))).............))))---- ( -22.12) >DroSec_CAF1 38041 90 - 1 AACUU-UUUGCUGGUGCCAAGUGGCAACAAAAGU-------UAGAUUGAAUUAAUUUUUUGUUUACG--------------AAAACCAGCACAGUUGUACAAUUGAAAAAUA .....-..((((((((((....)))(((((((((-------(((......)))).))))))))....--------------...)))))))(((((....)))))....... ( -21.30) >DroSim_CAF1 43561 90 - 1 AACUU-UUUGCUGGUGCCAAGUGGCAACAAAAGU-------UAGAUUGAAUUAAUUUUUUGUUUACG--------------AAAACCAGCACAGUUGUACAAUUGAAAAAUA .....-..((((((((((....)))(((((((((-------(((......)))).))))))))....--------------...)))))))(((((....)))))....... ( -21.30) >DroEre_CAF1 41726 90 - 1 AACUUUUUUGCUGGUGCCAAGUGGCAACAAAAGU-------UAGAUUGAAUUAAUUUUUUGUUUAUG--------------AAAACCAACA-AUAUAUACAAUUGAAAAAUA .......(((.(((((((....)))(((((((((-------(((......)))).))))))))....--------------...)))).))-)................... ( -13.50) >DroYak_CAF1 42997 89 - 1 AACUU-UUUGCUGGUGCCAAGUGGCAACAAAAGU-------UAGAUUGAAUUAAUUUUUUGUUU-UG--------------AAAACCAGCACAGUUAUACAAUUGAAAAAUA .....-..((((((((((....)))(((((((((-------(((......)))).)))))))).-..--------------...)))))))(((((....)))))....... ( -20.40) >consensus AACUU_UUUGCUGGUGCCAAGUGGCAACAAAAGU_______UAGAUUGAAUUAAUUUUUUGUUUACG______________AAAACCAGCACAGUUAUACAAUUGAAAAAUA ........((((((((((....)))((((((((......................)))))))).....................)))))))..................... (-10.51 = -11.90 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:59 2006