Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,072,232 – 1,072,388 |
Length | 156 |
Max. P | 0.805033 |
Location | 1,072,232 – 1,072,348 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 86.76 |
Mean single sequence MFE | -26.81 |
Consensus MFE | -19.61 |
Energy contribution | -20.62 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.15 |
Mean z-score | -1.48 |
Structure conservation index | 0.73 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1072232 116 + 27905053 ACUGAUUUAACUAAAAAGUGCCGUUUAACUCCACUGCGCACCAUAAGCUGUAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUUCGGAACACUUUCCAUCAAUCAGCCAA .((((((.......(((((((((............((((.(((........(((..(((.....)))..)))..))).))))........)))..)))))).....)))))).... ( -25.25) >DroSec_CAF1 8346 116 + 1 ACUGAUUUAACUGAAAAGUGCUGUUUAACUCCCGUGCGCGCCAUAAGCUGCAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUCCGGAACACUUUCCAUCAAUCAGCCAA .((((((....((.(((((((((....((....))((((((((.(((.(((((((((.....))))))))))))))))))))........)))..)))))).))..)))))).... ( -33.00) >DroEre_CAF1 8824 115 + 1 AUUGAUUUAACUGAGAAGUGCUGCUUAACUCCCC-AAGCGCCAUAAGCUGCAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUCCGGAACACUUUCCAUCAAUCAGCCAA .((((((.....(((((((((.((((........-))))((((.(((.(((((((((.....)))))))))))))))))))))).)))...((((....))))...)))))).... ( -30.10) >DroYak_CAF1 14681 111 + 1 AUUGAUUUAACUGAGAAGCGCUUUUAAAGUCCCC-ACCCGCCAUAAGCCGUAUAUGUACUUAAUGCGUGAGUUUUGGUGCGCU----UUCCGAAACACUUUCCAUCAAUCAGCCCA .((((((.....(..((((((.......((....-))..((((.((((((..(((.......)))..)).)))))))))))))----)..)(((.....)))....)))))).... ( -18.90) >consensus ACUGAUUUAACUGAAAAGUGCUGUUUAACUCCCC_ACGCGCCAUAAGCUGCAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUCCGGAACACUUUCCAUCAAUCAGCCAA .((((((....((.((((((...............((((((((.(((.(((((((((.....)))))))))))))))))))).............)))))).))..)))))).... (-19.61 = -20.62 + 1.00)
Location | 1,072,232 – 1,072,348 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 86.76 |
Mean single sequence MFE | -31.38 |
Consensus MFE | -25.27 |
Energy contribution | -25.89 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.18 |
Mean z-score | -1.60 |
Structure conservation index | 0.81 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1072232 116 - 27905053 UUGGCUGAUUGAUGGAAAGUGUUCCGAAAAGUAAGCGCGCCAAAAUACACACAUUAAGUACAUAUACAGCUUAUGGUGCGCAGUGGAGUUAAACGGCACUUUUUAGUUAAAUCAGU ...(((((((..(((((((((((...........((((((((............(((((.........))))))))))))).((........)))))))))))))....))))))) ( -33.20) >DroSec_CAF1 8346 116 - 1 UUGGCUGAUUGAUGGAAAGUGUUCCGGAAAGUAAGCGCGCCAAAAUACACACAUUAAGUACAUAUGCAGCUUAUGGCGCGCACGGGAGUUAAACAGCACUUUUCAGUUAAAUCAGU ...(((((((..(((((((((((...........((((((((............(((((.........)))))))))))))((....)).....)))))))))))....))))))) ( -37.60) >DroEre_CAF1 8824 115 - 1 UUGGCUGAUUGAUGGAAAGUGUUCCGGAAAGUAAGCGCGCCAAAAUACACACAUUAAGUACAUAUGCAGCUUAUGGCGCUU-GGGGAGUUAAGCAGCACUUCUCAGUUAAAUCAAU ...(((..((..(((((....)))))..))...)))((((((............(((((.........)))))))))))((-(((((((........))))))))).......... ( -27.80) >DroYak_CAF1 14681 111 - 1 UGGGCUGAUUGAUGGAAAGUGUUUCGGAA----AGCGCACCAAAACUCACGCAUUAAGUACAUAUACGGCUUAUGGCGGGU-GGGGACUUUAAAAGCGCUUCUCAGUUAAAUCAAU .....(((((..((..((((((((...((----(((.((((........(((..(((((.........)))))..))))))-).)..))))..))))))))..))....))))).. ( -26.90) >consensus UUGGCUGAUUGAUGGAAAGUGUUCCGGAAAGUAAGCGCGCCAAAAUACACACAUUAAGUACAUAUACAGCUUAUGGCGCGC_GGGGAGUUAAACAGCACUUCUCAGUUAAAUCAAU ...(((((((..(((((((((((...((......((((((((............(((((.........))))))))))))).......))....)))))))))))....))))))) (-25.27 = -25.89 + 0.62)
Location | 1,072,270 – 1,072,388 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 90.59 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -24.52 |
Energy contribution | -23.84 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.21 |
Mean z-score | -1.38 |
Structure conservation index | 0.90 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1072270 118 + 27905053 CACCAUAAGCUGUAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUUCGGAACACUUUCCAUCAAUCAGCCAAUCGAAUUCCCUGAUCUGGGCAAACACAACGCGCCAACACG .............(((..(((.....)))..))).((((((((..........((((....))))........(((.((((.......))))...)))........)))))))).... ( -27.30) >DroSec_CAF1 8384 118 + 1 CGCCAUAAGCUGCAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUCCGGAACACUUUCCAUCAAUCAGCCAAUCGAAUUCCCUGAUCUGGGCAAACACAACGCGCCAACACC .((.....))(((((((((.....)))))))))..((((((((..........((((....))))........(((.((((.......))))...)))........)))))))).... ( -29.30) >DroSim_CAF1 8522 113 + 1 -----AAAGCUGCAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUCCGGAACACUUUCCAUCAAUCAGCCAAUCGAAUUCCCUGAUCUGGGCAAACACAACGCGCCAACACC -----.....(((((((((.....)))))))))..((((((((..........((((....))))........(((.((((.......))))...)))........)))))))).... ( -29.00) >DroEre_CAF1 8861 118 + 1 CGCCAUAAGCUGCAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUCCGGAACACUUUCCAUCAAUCAGCCAAUUGAAUUCCCCGAUCUGGGCAAACACAACGCGCCAACGCC ........(((((((((((.....)))))))))..((((((((..........((((....))))........(((.((((.......))))...)))........)))))))).)). ( -30.20) >DroYak_CAF1 14718 113 + 1 CGCCAUAAGCCGUAUAUGUACUUAAUGCGUGAGUUUUGGUGCGCU----UUCCGAAACACUUUCCAUCAAUCAGCCCAUUGAAUUCCCUGAUCUGGGCA-ACACAUCGUGCCAACACC .((..((((...........))))..))(((.(((((((......----..)))))))...............(((((...............))))).-.)))...(((....))). ( -20.86) >consensus CGCCAUAAGCUGCAUAUGUACUUAAUGUGUGUAUUUUGGCGCGCUUACUUUCCGGAACACUUUCCAUCAAUCAGCCAAUCGAAUUCCCUGAUCUGGGCAAACACAACGCGCCAACACC ..........(((((((((.....)))))))))..((((((((..........((((....))))........(((.((((.......))))...)))........)))))))).... (-24.52 = -23.84 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:16 2006