Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,355,907 – 7,356,005 |
Length | 98 |
Max. P | 0.797216 |
Location | 7,355,907 – 7,356,005 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 72.73 |
Mean single sequence MFE | -24.53 |
Consensus MFE | -10.35 |
Energy contribution | -10.91 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.38 |
Mean z-score | -1.98 |
Structure conservation index | 0.42 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7355907 98 + 27905053 UUCGGAACUUUUGGUUGCAUCCUGUGCGUUCUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUAUUCCCCCC------CUUAUAGGGU-CCCUCCGA-C--- .(((((.......((((((.((..(((((.......)))))...)).)))))).....-...................((------(.....))).-...)))))-.--- ( -26.00) >DroVir_CAF1 33012 82 + 1 UUUGGCA----------CAUCCGCUGUUCGCUUUCCAUGCAAUUGGCUUAAGCAAUUUACGUUUGGUUGU-GGUCU-------------UGGCUAC-ACCCAAGCAC--- ...(((.----------.....)))....((((.(((......)))...)))).......((((((.(((-(((..-------------..)))))-).))))))..--- ( -25.10) >DroSec_CAF1 31916 102 + 1 UUCGGAACUUUCAGUUGCAUCCUGUGCGUACUUUCCACGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUAUUACCCCCCUC--CCUUUAAGGGU-ACCCCAGC-C--- .............((((((.((..(((((.......)))))...)).)))))).....-.....((((.....(((((.....--.......))))-)....)))-)--- ( -27.00) >DroSim_CAF1 37381 102 + 1 UUCGGAACUUUCGGUUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCAUUUAUUCCCCCCCUC--CCUUUAAGGGU-ACCCCAGC-C--- ...((........((((((.((..(((((.......)))))...)).)))))).....-...................((((.--......)))).-...))...-.--- ( -22.10) >DroEre_CAF1 35711 101 + 1 UUCGGAACUUUCGGGUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUACUCCCCCGCCCCUCUUUUAAGGGCC---CCCAU----- ...((.......(((((((.((..(((((.......)))))...)).))))((.....-......)).........)))((((.........)))).---.))..----- ( -24.10) >DroYak_CAF1 36736 101 + 1 UUCGGAACUUUCGGGUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUAUCCCCC-------CUCUUAAGGGCUUCCCCCCU-CCAA ...(((......(((((((.((..(((((.......)))))...)).)))).......-.....((((((((......-------....)))))))).)))...)-)).. ( -22.90) >consensus UUCGGAACUUUCGGUUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU_CACUUGGCUUUUAUUCCCCCC_____CCUUUAAGGGC_ACCCCAGC_C___ ...((........(.((((.((..(((((.......)))))...)).)))).)............(((((((.................)))))))....))........ (-10.35 = -10.91 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:56 2006