Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,347,901 – 7,347,997 |
Length | 96 |
Max. P | 0.862516 |
Location | 7,347,901 – 7,347,997 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -18.18 |
Consensus MFE | -15.28 |
Energy contribution | -15.62 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.84 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7347901 96 + 27905053 UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCACACAUGCACUGCAAGAAAAU-----------------------AUCCAAAGAAG .....((((((.........((((....))))..........(((((((....)))).))).............)))))).....-----------------------........... ( -17.70) >DroSec_CAF1 23900 96 + 1 UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCCCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCACAUGCACUGCAAGAAAAU-----------------------AUCCGAAGUAG .....((((((...............................(((((((....)))).)))...((....))..)))))).....-----------------------........... ( -19.00) >DroSim_CAF1 29374 96 + 1 UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCACAUGCACUGCAAGAAAAU-----------------------AUCGAAAAUAG .....((((((...............................(((((((....)))).)))...((....))..)))))).....-----------------------........... ( -19.00) >DroEre_CAF1 27780 102 + 1 UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCAAAUGCACUGCAAGAAUACACGUAU-----------------AUCCAAAGUAG .....((((((...............................(((((((....)))).)))...((....))..))))))...........-----------------........... ( -19.00) >DroYak_CAF1 28591 96 + 1 UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCUGCAAGUGCACUGCAAGAAUGC-----------------------AUCCUAAAUAG ....(((((((.........((((....))))..........(((((((....)))).)))..)))))))....((((....)))-----------------------).......... ( -21.30) >DroAna_CAF1 26345 117 + 1 UAUAACUUGCAUUUACAAUUGAUUUUAAAAUC-CCAACAAAAGCCACUGUCAACAGUCGCCGCCACAGAUGAACUGCAAAAAAUA-AGUUUUAACUCUGACUCUUAACUCUAAAAAUAU ........((..........((((....))))-.........((.((((....)))).)).))..((((.(((((..........-)))))....)))).................... ( -13.10) >consensus UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCACAUGCACUGCAAGAAAAU_______________________AUCCAAAAUAG .....((((((.........((((....))))..........(((((((....)))).))).............))))))....................................... (-15.28 = -15.62 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:50 2006