Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,345,322 – 7,345,428 |
Length | 106 |
Max. P | 0.724778 |
Location | 7,345,322 – 7,345,428 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 84.19 |
Mean single sequence MFE | -28.86 |
Consensus MFE | -22.70 |
Energy contribution | -23.56 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.06 |
Mean z-score | -2.04 |
Structure conservation index | 0.79 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724778 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7345322 106 + 27905053 AAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUCCCCCCCGCC-UCACCG---------CCGUCACAGCUUGCGGCUUUCAAAGCG ................(((....((((((((((((((((..((.....(..-...)((.............)).-.....)---------).)))))))))))))))).....))). ( -30.22) >DroSec_CAF1 21413 105 + 1 AAAACAAGUUCGGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUCCC-CCCGCC-CCACCG---------CCGUCACAGCUUGCUGCUUUCAAAGCG ................(((....(((.((((((((((((..((.....(..-...)((.........-...)).-.....)---------).)))))))))))).))).....))). ( -26.40) >DroSim_CAF1 26840 105 + 1 AAAACAAGUUCGGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUCCC-CCCGCC-CCGCCA---------CCGUCACAGCUUGCGGCUUUCAAAGCG ................(((....((((((((((((((((..((.....(..-...)((.........-...)).-..))..---------..)))))))))))))))).....))). ( -29.90) >DroEre_CAF1 25301 104 + 1 GAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUUCG-CCUUCC-UUGCC----------CCUUCACAGCUUGCGGCUUUCAAAGCG ................(((....(((((((((((((((...(((....(((-....((........)-).))).-.))).----------...))))))))))))))).....))). ( -31.40) >DroYak_CAF1 25992 104 + 1 AAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUACUUUCG-CCUUUC-CUGCC----------CCUUCACAGCUUGCGGCUUUCAAAGCG ................(((....(((((((((((((((...(((....(((-....((........)-)..)))-.))).----------...))))))))))))))).....))). ( -32.10) >DroAna_CAF1 24353 117 + 1 GAAACAAGUUGUAUAAGCAGCUUAGCUGCAACUUGUGAUUAGCACACAAAAGUCUCACCCCUUUUCCAGCCGCAGCCACCACCACAUCCACAUCCACAGCCAGUGGCUUUCCAAGCG ...(((((((((...(((......)))))))))))).....((....(((((........)))))..((((((.((......................))..))))))......)). ( -23.15) >consensus AAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA_UUUCGCCUAUUUCCC_CCCGCC_CCACC__________CCGUCACAGCUUGCGGCUUUCAAAGCG ................(((....(((((((((((((((.......................................................))))))))))))))).....))). (-22.70 = -23.56 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:49 2006