Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,344,884 – 7,344,980 |
Length | 96 |
Max. P | 0.573519 |
Location | 7,344,884 – 7,344,980 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 72.49 |
Mean single sequence MFE | -17.43 |
Consensus MFE | -10.05 |
Energy contribution | -11.05 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.58 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7344884 96 - 27905053 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACACACACAUACAC--A----CUCACACGGCGACAAUGACACCAUGACACCAAUGACA .(((((......)))))..(((.((((((((((....)))))).))))..........--.----....((.((.(.......).)).))...)))...... ( -19.10) >DroSec_CAF1 20977 92 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCGCACUCACACAC--AC--ACAC--A----CUCACACGGCGACAAUGACACCAUGACACCAAUGACA .(((((......)))))..(((.((((((((((....)))))).))))--..--....--.----....((.((.(.......).)).))...)))...... ( -17.60) >DroSim_CAF1 26420 94 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACACACAC--ACAC--A----CUCACACGACGACAAUGACACCAUGACACCAAUGACA .(((((......)))))..(((.((((((((((....)))))).))))....--....--.----..............(((....)))....)))...... ( -17.20) >DroWil_CAF1 17048 74 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCAGACAGGACACAUUCGC--ACAC--A----UUCCCACG--------------------CAAUUUUCA .(((((......)))))....(((((..(((((((.((..(....)..))))--.)))--.----))..))))--------------------)........ ( -15.20) >DroYak_CAF1 25557 96 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACUCACACACAC----ACGAGUUUACA--CCAACAAUGACACCCUGACACCAAUGACA .(((((......)))))...((.((((((((((....)))))..((((........----..)))).....--........))))))).............. ( -18.70) >DroAna_CAF1 23838 86 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGUCACACACACACU---AC--AGACAAUCGACUGCGAA--AUAACAAUGAUACCA---------UGCCA .(((((......)))))...(((((((((((((((.....)).))))---.)--))....(((....))).--.............))---------)))). ( -16.80) >consensus ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACACACAC__ACAC__A____CUCACACGACGACAAUGACACCAUGACACCAAUGACA .(((((......)))))......((((.(((((....)))))))))........................................................ (-10.05 = -11.05 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:48 2006