Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,344,055 – 7,344,155 |
Length | 100 |
Max. P | 0.930972 |
Location | 7,344,055 – 7,344,155 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 68.98 |
Mean single sequence MFE | -22.85 |
Consensus MFE | -13.38 |
Energy contribution | -14.63 |
Covariance contribution | 1.26 |
Combinations/Pair | 1.38 |
Mean z-score | -1.67 |
Structure conservation index | 0.59 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7344055 100 - 27905053 AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCUACGCAUCAAAUAUUCAUUGGCAAACCGGACCUUGUUGCAACUCCACAAU .............(((((......(((.((((.((.(((((((....))))))).)).)))).)))....((((...........))))...)))))... ( -20.40) >DroSec_CAF1 20154 100 - 1 AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGCAUCAAAUAUUCAUUGGCAAGCCGGACCUUGUUGCAACUCCACGAU ............((((((..(((.(((.((((.((.(((((((....))))))).)).)))).)))...((((((......)))))).))).)))))).. ( -27.00) >DroSim_CAF1 25577 100 - 1 AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGCAUCAAAUAUUCAUUGGCAAGCCGGACCUUGUUGCAACUCUACGAU ............((((((..(((.(((.((((.((.(((((((....))))))).)).)))).)))...((((((......)))))).))).)))))).. ( -24.70) >DroEre_CAF1 24018 99 - 1 AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCAGGGAUCAAAUAUUCAUU-GCAACCCCUACCUUGUUGCAAUUUCUCGAC .........((....))...((((((((((((.((((.(((((....))))).)))).)))).....((-(((((.........))))))))))))))). ( -24.90) >DroWil_CAF1 16224 76 - 1 ------GGGUAUGGGAAGGAGAAGUAACAACAGAUCAACAAAUAUGGGUAAAUGAUAAACAAAUUUUGAAAC------------------UCUUUGAUCA ------.....(((.((((((..((....)).......((((..((..((.....))..))...))))...)------------------)))))..))) ( -6.90) >DroYak_CAF1 24725 99 - 1 AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGGAUCAAAUAUUCAUU-GCAACCCGGACCUUGUUGCAAAUCCACGAA ............((((((......(((.((((.((((((((((....)))))))))).)))).))).((-(((((.........))))))).)))))).. ( -33.20) >consensus AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGCAUCAAAUAUUCAUUGGCAACCCGGACCUUGUUGCAACUCCACGAU ............((((((......(((.((((.((.(((((((....))))))).)).)))).)))....((((...........))))...)))))).. (-13.38 = -14.63 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:47 2006