| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,341,266 – 7,341,363 |
| Length | 97 |
| Max. P | 0.750254 |
| Location | 7,341,266 – 7,341,363 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -38.03 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.45 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7341266 97 + 27905053 UGGCCCCGAAACGUGGCCC----------CGUCAUGCUGCGCCUGCAUUGUGUUAAUGCUUUUUGUUAAGCAACAAGAAGCAGCGGCAACAAUG-UGC-----GAUGGGCG-----GG .((((.((...)).))))(----------((((......(((..((((((((((..(((((((((((....)))))))))))..))).))))))-)))-----)...))))-----). ( -41.00) >DroVir_CAF1 15543 93 + 1 --GCUCCGAAACGUGGCCC---------UCGUCAUGCUGCGCCUGCAUUGUGUUAAUGCUUUUUGUUAAGCUACAAGGAGCAGCGCGGAGA-----GC-----GAAGCGGAGCA---- --(((((.....(((((..---------..)))))(((.(((((.(...((((...((((((((((......))))))))))))))).)).-----))-----).)))))))).---- ( -37.70) >DroWil_CAF1 12856 98 + 1 UGGCCCCGAAACGUGGCCC----------CGUCAUGCUGCGCCUGCAUUGUGUUAAUGCUUUUUGUUAAGCUACAAGGAGGAGCGGCAACAACAAUGU-----CAUGGCAU-----GG .((((.((...)).)))).----------...((((((..(...((((((((((..((((((((.((.......)).))))))))..))).)))))))-----)..)))))-----). ( -31.80) >DroMoj_CAF1 14241 95 + 1 --GCUCCGAAUCGUAGCCC---------UCGUCAUGCUGCGCCUGCAUUGUGUUAAUGCUUUUUGUUAAACUGCAAGGAGUUGCGCGAA-------GC-----GGUGCGGGGCUCAUG --(((((.....(((((..---------.......)))))((((((.((((((....(((((((((......))))))))).)))))).-------))-----)).)))))))..... ( -38.70) >DroAna_CAF1 16130 101 + 1 UGGCCCCGAAACGUGGCCC----------CGUCAUGCUGCGCCUGCAUUGUGUUAAUGCUUUUUGUUAAGCAACAAGGAGGAGCGGCAACAAUA-UGAGGAACGACGGGCA-----U- .((((.((...)).))))(----------((((.((((((.(((.(.((((.....(((((......)))))))))).))).)))))).(....-.)......)))))...-----.- ( -36.00) >DroPer_CAF1 11844 112 + 1 UGGCCCCGAAACGUGGCCCCCGUCGCCGUCGUCAUGCUGCGCCUGCAUUGUGUUAAUGCUUUUUGUUAAGCUACAAGGAGGAGCGGCAACAAUG-UGCAGGAGGAUGGGCC-----AG (((((((((...(((((....)))))..))).....((...(((((((..((((..((((((((.((.......)).))))))))..))))..)-)))))).))..)))))-----). ( -43.00) >consensus UGGCCCCGAAACGUGGCCC__________CGUCAUGCUGCGCCUGCAUUGUGUUAAUGCUUUUUGUUAAGCUACAAGGAGGAGCGGCAACAAU__UGC_____GAUGGGCA_____GG .((((.((...)).))))................((((((....((((((...))))))(((((((......)))))))...)))))).............................. (-19.23 = -19.45 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:46 2006