Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,340,614 – 7,340,734 |
Length | 120 |
Max. P | 0.938539 |
Location | 7,340,614 – 7,340,734 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.58 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -25.24 |
Energy contribution | -25.34 |
Covariance contribution | 0.10 |
Combinations/Pair | 1.20 |
Mean z-score | -2.00 |
Structure conservation index | 0.80 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7340614 120 + 27905053 GUAGUCGUGGAAUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAAGCAAUAAAAUGCUG .(((...((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))....)))....((((......)))). ( -29.50) >DroSec_CAF1 16798 107 + 1 GUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUAAAUAAAUUCCUGGAUUCCAAAGACUGGACAAG------------- .(((((.((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))..)))))......------------- ( -33.10) >DroSim_CAF1 22178 120 + 1 GUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUAAAUAAAUUCCUGGAUUCCAAAGUCUGGACAAGCAAUAAAAUGCUG .(((...((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))....)))....((((......)))). ( -32.40) >DroEre_CAF1 20594 120 + 1 GUAGUCGUGAAGUGCAGGGGUAUAUGUGUGCAUGCCAAUGAAGAAUAUGUACUAUGUAUUUCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCCGGACAAGCACUAAAAUGCUG .((((.((...((.(((..(((((((.(((((((...........))))))))))))))..))).)).)).)))).........(((((((....)))))))...((((......)))). ( -33.30) >DroYak_CAF1 21285 120 + 1 GUAGUCGUGGAGUGCAGGGGAAUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUGUACUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAGGCAACCAAAUGCUG .((((..(((.(..((.(......).))..).((((..(((((..((.(((((.(((.(..(((.....)))..).))).)))))))..)))))..((....)).)))).)))...)))) ( -28.70) >consensus GUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAAGCAAUAAAAUGCUG ...(((.((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).)))))).......))).((((......)))). (-25.24 = -25.34 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:45 2006