Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,070,219 – 1,070,330 |
Length | 111 |
Max. P | 0.560728 |
Location | 1,070,219 – 1,070,330 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.27 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -18.82 |
Energy contribution | -18.93 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.16 |
Structure conservation index | 0.78 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1070219 111 - 27905053 GUUGACUGGUCUAAUAACCCGGUAUACUGGUAUAAAUCGAAAUUAAAUUAAAUUUGUGGGAUUAACCAUGUUGAUGGUGAACUGGCUUAUGCUUGUUAGCCGCACUUAACA ((..((((((.((((..(((((....)))).((((((..((......))..)))))))..)))))))).))..))(((.(((.(((....))).))).))).......... ( -24.00) >DroSec_CAF1 6410 86 - 1 CUUGACUGGUAUAAUAACCCGGAAU-------------------------CAUUUGUGGGAUUAACCAUACUGGUGGUGAACUGGCUCAGGCUUGUUAGCCGCACUUAAUA ......((((.((((..((((.((.-------------------------...)).)))))))))))).....(((((.(((.(((....))).))).)))))........ ( -23.10) >DroSim_CAF1 6568 86 - 1 CUUGACUGGUAUAAUAACCCGGAAU-------------------------CAUUUGUGGGAUUAACCAUGUUGGUGGUGAACUGGCUUAGGCUUGUUAGCCGCACUUAAUA ...(((((((.((((..((((.((.-------------------------...)).)))))))))))).))).(((((.(((.(((....))).))).)))))........ ( -25.10) >consensus CUUGACUGGUAUAAUAACCCGGAAU_________________________CAUUUGUGGGAUUAACCAUGUUGGUGGUGAACUGGCUUAGGCUUGUUAGCCGCACUUAAUA .....((((.........))))................................(((((......)))))...(((((.(((.(((....))).))).)))))........ (-18.82 = -18.93 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:13 2006