Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,333,319 – 7,333,432 |
Length | 113 |
Max. P | 0.935031 |
Location | 7,333,319 – 7,333,432 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 90.41 |
Mean single sequence MFE | -23.43 |
Consensus MFE | -17.42 |
Energy contribution | -17.86 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.58 |
Structure conservation index | 0.74 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7333319 113 + 27905053 CCUCGACAGUACUGAAUCAAUCAA-AACCAGGACCUUGUCACCAGCUUGUCAUACUAAAGACACAACAC----ACAUAGUUGUCACGUGAUAAAUUCCUUUUAUUCAUUGCUGCCCUU ......(((((.(((((.((....-....((((..(((((((......(((........)))(((((..----.....)))))...)))))))..)))))).))))).)))))..... ( -24.00) >DroSec_CAF1 9535 112 + 1 CCUCGACAGUACUGAAUCAAUCAA-AACCAGGACCUUGUCAUCAGCUUGUCAUACUAAAGACACAACAC----ACAUAGUUGUCACGUAAUAAAUUCCUUUUAUUCAUUGCUGC-CUU ....(.(((((.(((((.((....-....((((..((((.........(((........)))(((((..----.....)))))......))))..)))))).))))).))))).-).. ( -16.30) >DroSim_CAF1 13338 112 + 1 CCUCGACAGUACUGAAUCAAUCAA-AACCAGGACCUUGUCAUCAGCUUGUCAUACUAAAGACACAACAC----ACAUAGUUGUCACGUGAUAAAUUCCUUUUAUUCAUUGCUGC-CUU ....(.(((((.(((((.((....-....((((..(((((((......(((........)))(((((..----.....)))))...)))))))..)))))).))))).))))).-).. ( -22.20) >DroEre_CAF1 13349 117 + 1 CCUCUACAGUACUGAAUCAAUCAAGAUCCAGGACAUUGUCACCGCCUUGUCAUACUAAAGACACAACAUACAUACAUAGUUUUCUCGUGAUAAAUUCCUUUAAUGCAUUGUCAC-CUU ..(((..(((((((.(((......))).)))((((..((....))..)))).))))..))).........................(((((((..............)))))))-... ( -16.54) >DroYak_CAF1 13793 113 + 1 CCUCGGCAGUACUGAAUCAAUCAAGAACCAGGACCUUGUCACCGACUUGUCAUACUAAAGACACAGCAC----ACAUAGUUGUCUCGUGAUAAAAUCCUUUGAUUCAUUGCUGC-CUU ....(((((((.((((((((.........((((..(((((((.((....))........((.(((((..----.....))))).)))))))))..)))))))))))).))))))-).. ( -38.10) >consensus CCUCGACAGUACUGAAUCAAUCAA_AACCAGGACCUUGUCACCAGCUUGUCAUACUAAAGACACAACAC____ACAUAGUUGUCACGUGAUAAAUUCCUUUUAUUCAUUGCUGC_CUU ......(((((.(((((.((.........((((..(((((((......(((........)))(((((...........)))))...)))))))..)))))).))))).)))))..... (-17.42 = -17.86 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:41 2006