Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,331,486 – 7,331,576 |
Length | 90 |
Max. P | 0.736674 |
Location | 7,331,486 – 7,331,576 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 74.77 |
Mean single sequence MFE | -22.97 |
Consensus MFE | -10.69 |
Energy contribution | -11.38 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.42 |
Mean z-score | -1.93 |
Structure conservation index | 0.47 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7331486 90 + 27905053 AGUAAAUAGGUGGAGAGAGCAUAUGUGCU-GGCUAGG-----C--UAUAUAUAGUCAAUCUUGGCUAUGUGGCAA--A-------UGGGACAUAUACAUUUUGUUCA .((.....(((..((..((((....))))-..))..)-----)--).((((((((((....))))))))))))..--.-------..(((((.........))))). ( -21.80) >DroSec_CAF1 7669 90 + 1 AGUAAAUAGGUCGGGAGUGCAUAUGUGCU-GGCUAGG-----C--UAUAUAUAGUCAAUCUUGGCUAUGUGGCAA--A-------UAAGACAGAUACAUUUUGCUCA ..............(((((...(((((((-(.((..(-----(--(((..(((((((....))))))))))))..--.-------..)).))).)))))..))))). ( -22.50) >DroSim_CAF1 11482 90 + 1 AGUAAAUAGGUCGAGAGAGCAUAUGUGCU-GGCUAGG-----C--UAAAUAUAGUCAAUCUUGGCUAUGUGGCAA--A-------UAAGACAGAUACAUUUUGCUCA ................(((((.(((((((-(.((..(-----(--(..(((((((((....))))))))))))..--.-------..)).))).)))))..))))). ( -26.30) >DroEre_CAF1 11507 80 + 1 AGUAAAUGGGUCGAGAGUGCAUAUGUGCU-GGCUAU--------------AUAGUC-AUCUUGGCUAUGUGGCGA--A-------UAAGACAGAUACAUUAUGC--A .(((((((..((...((..(....)..))-.(((((--------------((((((-.....)))))))))))..--.-------.......))..)))).)))--. ( -25.90) >DroYak_CAF1 11851 96 + 1 AGUAAAUAGGUCGAGAGUGCAUAUGUUCU-GGCUAUGAGGUCCUAUAUACAUAGUC-AUCUUGGCUAUGUGGCGA--U-------UAAGACAGAUACAUUAUGCUCA ................(.(((((((((((-(.((....((((.....(((((((((-.....)))))))))..))--)-------).)).)))).))).))))).). ( -23.40) >DroAna_CAF1 5210 90 + 1 AGUAAAUAGGUCGAGAGUGCAUUUGUGUGCAGCCAG----------AUGUAUGGAC-GU----GGUAUAUAGCGCACAUAAUAUAUAUGAUAUAUAUAAUAUAU--G ................((((..((((((((.((((.----------.....))).)-..----.)))))))).))))(((.(((((((...))))))).)))..--. ( -17.90) >consensus AGUAAAUAGGUCGAGAGUGCAUAUGUGCU_GGCUAGG_____C__UAUAUAUAGUC_AUCUUGGCUAUGUGGCAA__A_______UAAGACAGAUACAUUAUGCUCA .(((....((((...((..(....)..)).)))).............(((((((((......))))))))).......................))).......... (-10.69 = -11.38 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:40 2006