Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,330,862 – 7,330,962 |
Length | 100 |
Max. P | 0.877647 |
Location | 7,330,862 – 7,330,962 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 91.80 |
Mean single sequence MFE | -17.52 |
Consensus MFE | -14.82 |
Energy contribution | -14.26 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -1.58 |
Structure conservation index | 0.85 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7330862 100 - 27905053 AAAAUUGUAAAAUAAAUAUUUUAGGUCGUUACUUAUUAAAGGGCUGAAUUUAAAUAUUAAAGCUGGCAUACUCUGUACGAAAAGCAGUGAAAACAAUUAU ..((((((......(((((((..((((.((........)).))))......)))))))...(((..(.(((...))).)...))).......)))))).. ( -12.60) >DroSec_CAF1 7045 100 - 1 AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUACUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCGGGCUUACCCUGCACGAAAAGCAGUGAAAACAAUUAU ..((((((......(((((((....((((..(((....)))..))))....)))))))...(((((.....)))))................)))))).. ( -19.60) >DroSim_CAF1 10858 100 - 1 AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUACUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCUGGCUUACCCUGCACGAAAAGCAGUGAAAACAAUUAU ..((((((......(((((((....((((..(((....)))..))))....)))))))............(.((((.......)))).)...)))))).. ( -16.70) >DroEre_CAF1 10900 100 - 1 AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUGCUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCUGUCUUACGCGGCACGAAAACAAGCUAAAACAAUUAU ..((((((......(((((((....(((((.(((....))).)))))....)))))))...(((((.....)))))................)))))).. ( -19.60) >DroYak_CAF1 11188 100 - 1 AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUGCUUAUUAAAGGGAUGGAUUUAAAUAUUAAAGCCGGCUUAGCCUGCACGACAGCAAGUUAAAACAAUUAU ..((((((......(((((((....(((((.(((....))).)))))....))))))).........(((((.(((......))).))))).)))))).. ( -19.10) >consensus AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUACUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCUGGCUUACCCUGCACGAAAAGCAGUGAAAACAAUUAU ..((((((......(((((((....(((((.(((....))).)))))....)))))))...((.((.....)).))................)))))).. (-14.82 = -14.26 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:39 2006