Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,327,837 – 7,327,937 |
Length | 100 |
Max. P | 0.992629 |
Location | 7,327,837 – 7,327,937 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.10 |
Mean single sequence MFE | -22.91 |
Consensus MFE | -22.18 |
Energy contribution | -22.23 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.75 |
Structure conservation index | 0.97 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7327837 100 - 27905053 UUC-AUCACCAUAUCCCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC ...-......................(((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))))... ( -23.80) >DroSec_CAF1 4137 100 - 1 UCC-AUCUCCAUAUACCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUUCUC ...-.......................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... ( -22.50) >DroSim_CAF1 7921 100 - 1 ACC-AUCUCCAUAUCGCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC ...-......................(((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))))... ( -23.80) >DroEre_CAF1 7843 100 - 1 UCU-AUCUCCAUAUACCCAUCAUCCCGAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC ...-.......................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... ( -23.30) >DroYak_CAF1 8089 100 - 1 UCC-AUCUCCAUAUACCCAUCAUCCCGAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC ...-.......................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... ( -23.30) >DroAna_CAF1 897 90 - 1 UCUAAGCUCC-----------GCCCACUGUUGCACUUCCCCAAGCGGGCCCUAAACUGAGCUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC ....((((.(-----------((((.((..............)).))))..........(((((.(((........)))...)))))....).)))).... ( -20.74) >consensus UCC_AUCUCCAUAUACCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC ...........................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... (-22.18 = -22.23 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:36 2006