Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,325,224 – 7,325,328 |
Length | 104 |
Max. P | 0.664104 |
Location | 7,325,224 – 7,325,328 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.79 |
Mean single sequence MFE | -23.84 |
Consensus MFE | -22.08 |
Energy contribution | -22.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.16 |
Structure conservation index | 0.93 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7325224 104 - 27905053 AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC---------------- ............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((..((....).)..))))....---------------- ( -22.30) >DroSec_CAF1 1554 104 - 1 AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGCCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCUGUGGCAGCAACAGACAACCACACAC---------------- ............(((((((((.....(((....)))....)))))))))..(((((.(((((.......))))))))))((((..((....).)..))))....---------------- ( -27.40) >DroSim_CAF1 5319 104 - 1 AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC---------------- ............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((..((....).)..))))....---------------- ( -22.30) >DroEre_CAF1 5294 120 - 1 AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACUACCACACACACUCCCAAACUCCCAC ....(((((..((((((((.......(((....)))...(((..........))).))))))))..))))).((((...((((.(((....).)).))))...))))............. ( -24.90) >DroYak_CAF1 5434 106 - 1 AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC------------CC-- ............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((..((....).)..))))....------------..-- ( -22.30) >consensus AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC________________ ............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((.............)))).................... (-22.08 = -22.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:31 2006