Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,324,285 – 7,324,405 |
Length | 120 |
Max. P | 0.904455 |
Location | 7,324,285 – 7,324,405 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -31.19 |
Consensus MFE | -24.82 |
Energy contribution | -25.10 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.18 |
Mean z-score | -1.92 |
Structure conservation index | 0.80 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7324285 120 + 27905053 AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCUUUCAUCGGACUGCUUUGAAAUAUUGAACUUAACAUAUUAAAGCAUACUUUUCUGGGC ..((((((......((((((((....))))))))..((((((((..(((.(....))))..))))..))))..((((((((.((.(((....))).)).))))))))...)))))).... ( -30.60) >DroSec_CAF1 609 120 + 1 AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCCUUCAGCGGACUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCUUACUUAUCGGGGA ..............((((((((....)))))))).(((((.((((...(((.(((((..((((....).)))..)))))...........(((((....)))))))).)))).))))).. ( -31.10) >DroSim_CAF1 4366 120 + 1 AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCUUUCAGCGGACUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCUUACUUUUCGGGGA ..............((((((((....)))))))).((((((((((.((.(((((((.....))))).)).))..(((((((.((.(((....))).)).)))))))..)))))))))).. ( -35.10) >DroEre_CAF1 4341 120 + 1 AAAGAAGACUACACAGAGUGGUACUUGUCGUUCCACUCCAGAAGUUUCAGCGAAAGUGAUCCUUUCAACGGUCUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCAUUCUUUUCGAGGC .....(((((.....((((((.((.....)).))))))..((((..(((.(....))))..))))....)))))(((((((((.......(((((....))))).......))))))))) ( -31.14) >DroYak_CAF1 4479 120 + 1 AAAGAAGACGACACAGAAUGAUACUUGUCGUUCCACUCCAGAAGUUUCAGCGAAAGUGAUCCUUUCAAUGGUCUGCUUUGAAAUAUUGAAUUCAGCAUAUUAAAGCAUUCUUUUCGAGGC ((((((...(((.(((((((((....))))))).......((((..(((.(....))))..))))...)))))((((((((.((.(((....))).)).))))))))))))))....... ( -28.00) >consensus AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCUUUCAACGGACUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCAUACUUUUCGGGGC ..............((((((((....)))))))).(((((((((.......(((((.....)))))........(((((((.((.(((....))).)).)))))))...))))))))).. (-24.82 = -25.10 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:28 2006