Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,323,261 – 7,323,380 |
Length | 119 |
Max. P | 0.982065 |
Location | 7,323,261 – 7,323,380 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.09 |
Mean single sequence MFE | -28.26 |
Consensus MFE | -17.96 |
Energy contribution | -17.78 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -3.07 |
Structure conservation index | 0.64 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.982065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7323261 119 - 27905053 AGAUACAAAUACACAGAUAGAAAUUCAGCUUCG-AGCUAAGGAGUAGCAAGAGGAUAAAGAAUGUCUGGGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA .....(((.(((.((((((.........((((.-.((((.....))))..))))........)))))).((....))..(((....)))(((.......)))....))).)))....... ( -31.63) >DroSim_CAF1 3367 100 - 1 --------------------AAAUUCAGCUUCGGAGCUAAGGAGUAGCAAGAGGAUAAAGAAUGUCGGGGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA --------------------...(((.(((((...((((.....)))).....((((.....)))))))))....(((((((....)))(((.......)))........))))..))). ( -26.30) >DroEre_CAF1 3356 110 - 1 AGAUACA--------GAUACAAAUUUAGCUUCG-CAGUAAGGCGGAUCCAGAGGAUAAAGAAUGUCU-GGCGAAAGCUAGGUGAAAGCCGGCCAAAUAUGCCAAAAGUAGUUGCAGGAAA .....((--------(.(((.....((((((((-(....(((((.((((...))))......)))))-.))).))))))(((....)))(((.......)))....))).)))....... ( -28.40) >DroYak_CAF1 3456 110 - 1 AGAUACA--------GAUACAAAUUCAGCUGCG-AUGUGAGGAGGAGCCAAAGGAUAAAGAAUGUCG-GGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA .......--------.............(((((-((....((....(((....((((.....)))).-.((....))..))).....))(((.......))).......))))))).... ( -26.70) >consensus AGAUACA________GAUACAAAUUCAGCUUCG_AGCUAAGGAGGAGCAAGAGGAUAAAGAAUGUCG_GGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA .........................(((((.(.....................((((.....))))...((....))..(((....)))(((.......)))....).)))))....... (-17.96 = -17.78 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:22 2006