Locus 2726

Sequence ID 3R_DroMel_CAF1
Location 7,322,731 – 7,322,851
Length 120
Max. P 0.620185
window4431

overview

Window 1

Location 7,322,731 – 7,322,851
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.68
Mean single sequence MFE -32.02
Consensus MFE -29.22
Energy contribution -29.34
Covariance contribution 0.13
Combinations/Pair 1.03
Mean z-score -1.37
Structure conservation index 0.91
SVM decision value 0.18
SVM RNA-class probability 0.620185
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7322731 120 + 27905053
GAAUCAAACGUUUUGACAACCCAACGGCCUCAAAUGGAGCGUUUUGGGGCUUGUCCUAGGUUUAGUCUUUUGUCUUCUGUCCCGACGAAUAAACUAUCUGGGGCACAGCAACAACAAGUA
.......((...(((....(((((.((((((.....))).))))))))(((((((((((((..(((..((((((.........))))))...))))))))))))).)))..)))...)). ( -34.60)
>DroSim_CAF1 2858 120 + 1
GAAUCAAACGUUUUGACAACCCAACGGCCUCAAAUGGAGCGUUUUGGGGCUUGUCCUAGGUUUAGUCUUUUGUCUUCUGUCCCGACGAAUAAACUAUCUGGGCCACAGCAACAACAAGUA
.......((...(((....(((((.((((((.....))).))))))))(((((.(((((((..(((..((((((.........))))))...)))))))))).)).)))..)))...)). ( -30.20)
>DroEre_CAF1 2851 107 + 1
GAAUCAAACGUUUUGACAGCCCAACGGCCUCAAAUGGAGCGUUUUGGGGCUUGUCCUAGGU-------UUUGUCUUUUGUCCCGACGAAUAAACUAUCUGGGACAC------AACAAGUA
.......((...(((..(((((...((((((.....))).)))...)))))((((((((((-------...((..(((((....)))))...)).)))))))))))------))...)). ( -31.20)
>DroYak_CAF1 2875 108 + 1
GAAUCAAACGUUUUGACAGCCCAACGGCCUCAAAUGGAGCGUUUUGGGGCUUGUCCUAGGUA------UUUGUCUUUUGUCCCGACGAAUAAACUAUCUGGGACAC------AACAAGUA
.......((...(((..(((((...((((((.....))).)))...)))))(((((((((((------((((((.........)))))).....))))))))))))------))...)). ( -32.10)
>consensus
GAAUCAAACGUUUUGACAACCCAACGGCCUCAAAUGGAGCGUUUUGGGGCUUGUCCUAGGUU______UUUGUCUUCUGUCCCGACGAAUAAACUAUCUGGGACAC______AACAAGUA
...........((((..........(((((((((........)))))))))((((((((((.......((((((.........))))))......)))))))))).........)))).. (-29.22 = -29.34 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:21 2006