Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,322,498 – 7,322,618 |
Length | 120 |
Max. P | 0.587572 |
Location | 7,322,498 – 7,322,618 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.97 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -22.44 |
Energy contribution | -22.50 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.79 |
Structure conservation index | 0.85 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7322498 120 + 27905053 GCCUCAAAUAAAUUCGCAAGAAUUGAGCAAACUUUAGAGGAUUUCGAUUUGUUUUCCAUGAAAAUGGGCAAAUGCUAAAUGGAAAAUGGAAAAUUGAAAAUGAGAACCUGGCUAUGGGUA .((((.....(((((....)))))(((....)))..)))).((((((((((((((((((.......(((....)))..)))))))))...)))))))))......((((......)))). ( -30.70) >DroSim_CAF1 2625 120 + 1 GCCUCAAAUAAAUUCGCAAGAAUUGAGCAAACUUUAGAGGAUUGCGAUUUGUUUUCCAUGGAAAUGGGCAAAUGCUAAAUGGAAAAUUGAAAAUUGAAAAUGAGAACCUGGCUAUGGGUA ..((((....(((((....)))))..((((.((.....)).))))((((((((((((((.......(((....)))..)))))))))...))))).....)))).((((......)))). ( -27.80) >DroEre_CAF1 2615 120 + 1 GCCUCAAAUAAAUUUGCAAGAAUUGAGCAAACUUUAGAGGAUUGCGAUUUGUUUUCCAUGAAAAUGGGCAAAUGCUAAAUGGAAAAUUGAAAAUUGAAAAUGAGAACCUGACUAGGGGUA (((((...(((((((((.........))))).)))).(((.((.(((((((((((((((.......(((....)))..)))))))))...)))))).......)).))).....))))). ( -24.70) >DroYak_CAF1 2636 120 + 1 GCCUCAAAUAAAUUUGCAAGAAUUGAACAAACUUUAGAGGAUUGCGAUUUGUUUUCCCUGAAAAUGGGCAAAUGCUAAAUGGGAAAUUGAAAAUUGAAAAUGAGAACCUGGCUAGGGGUA ..((((((((((((.((((...(((((.....)))))....))))))))))))(((((........(((....)))....)))))...............)))).((((......)))). ( -22.30) >consensus GCCUCAAAUAAAUUCGCAAGAAUUGAGCAAACUUUAGAGGAUUGCGAUUUGUUUUCCAUGAAAAUGGGCAAAUGCUAAAUGGAAAAUUGAAAAUUGAAAAUGAGAACCUGGCUAGGGGUA .((((.....(((((....)))))(((....)))..))))....(((((((((((((((.......(((....)))..)))))))))...)))))).........((((......)))). (-22.44 = -22.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:20 2006