Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,315,196 – 7,315,309 |
Length | 113 |
Max. P | 0.912500 |
Location | 7,315,196 – 7,315,309 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -24.30 |
Consensus MFE | -19.88 |
Energy contribution | -19.72 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.82 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7315196 113 + 27905053 UCUUCAUAUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAACUCUUCCGGC--UUCCCACCAUGCACAACCCACUGCCC-CAUUCAGCUG ...............----....(((((((......(((.(((....))).)))...))))))).............((((--(.........(((........)))..-.....))))) ( -23.69) >DroSec_CAF1 8097 115 + 1 UCUUCAUAUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAGCUCUUCCGGCUCUUCUCACCCUGCACAACCCACUGCCC-CAUUCAACUG ...............----.....((((((......(((.(((....))).)))...))))))((((..((((.....))))...........))))............-.......... ( -24.32) >DroSim_CAF1 2596 115 + 1 UCUUCAUAUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAACUCUUCCGGCUCUUCUCACCCAGCACAACCCACAGCCC-CAUUCAACUG ...............----.....((((((......(((.(((....))).)))...))))))(((((........................)))))............-.......... ( -22.96) >DroEre_CAF1 7973 114 + 1 UCUUCAUGUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCAGGCAUUUGCCUGGUGCUAAACUCUUCCGGC--UUCGCACUAUUCACAUCCCACAGCCCCCUUUCAGCUG .....((((......----.....((((((......(((((((....)))))))...))))))((((.((.((.....)).--)).)))).....))))....((((.........)))) ( -30.70) >DroYak_CAF1 2574 117 + 1 UCUUCAUAUUUCACAUACAUAUUUCAGGCAUUUAUGGCCUGGUAUUUGCU-GGCAUUUGCCUGGUGCUAAACUCUUCCGGC--UCCGCACUAUUCACAUCCCACAGCCCCCAUUCAUCUG .......................((((((.......)))))).....(((-(((....)))((((((..............--...))))))............)))............. ( -19.83) >consensus UCUUCAUAUUUCACA____UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAACUCUUCCGGC__UUCGCACCAUGCACAACCCACAGCCC_CAUUCAACUG .......................(((((((......(((.(((....))).)))...)))))))..............(((........................)))............ (-19.88 = -19.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:00 2006