Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,314,966 – 7,315,086 |
Length | 120 |
Max. P | 0.975360 |
Location | 7,314,966 – 7,315,086 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.82 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -28.66 |
Energy contribution | -29.46 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.88 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7314966 120 - 27905053 AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAAGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC ..((((...............))))........((((..(((..........)))..((((..(((((......))))).)))).((((.(((((....))))).)))).......)))) ( -31.36) >DroSec_CAF1 7867 120 - 1 AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC ..((((...............))))........((((.((((((((.....((((.....))))((((......)))).......))))))))...((....))............)))) ( -33.76) >DroSim_CAF1 2366 120 - 1 AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC ..((((...............))))........((((.((((((((.....((((.....))))((((......)))).......))))))))...((....))............)))) ( -33.76) >DroEre_CAF1 7746 117 - 1 AAGUGCGCACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGAACAC---AUCAUAUCGGGC ..((((...............))))........((((.((((((((.....((((.....))))((((......)))).......))))))))......((....---.)).....)))) ( -32.06) >DroYak_CAF1 2337 117 - 1 AAGUGCGCCCCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUCAGAUUGCCAUUGCCGAACCC---AUCAUAUCGGGC ..((((...............))))........((((.(((((((......((((.....))))((((......))))........)))))))......((....---.)).....)))) ( -31.56) >consensus AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC ..((((...............))))........((((.(((((((......((((.....))))((((......))))........)))))))...((....))............)))) (-28.66 = -29.46 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:59 2006