Locus 2717

Sequence ID 3R_DroMel_CAF1
Location 7,313,655 – 7,313,773
Length 118
Max. P 0.898604
window4407

overview

Window 7

Location 7,313,655 – 7,313,773
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.54
Mean single sequence MFE -32.44
Consensus MFE -31.06
Energy contribution -31.30
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.30
Structure conservation index 0.96
SVM decision value 1.00
SVM RNA-class probability 0.898604
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7313655 118 + 27905053
UCAUGGCCAGAACAAAUGAUGUGGAAAUGUAAAAUAGAUGCCCGUCCACGCAAGAUGCCGCACAAAC--ACACUCACGGCCAGACAAACUGGCGCAGCAUGUGGCCAGCACUACACAGGA
...((((((.......((.((((((...(((.......)))...))))))))..((((.((......--.(......)(((((.....))))))).)))).))))))............. ( -33.40)
>DroSec_CAF1 6532 118 + 1
UCAUGGCCAGAACAAAUGAUGUGGAAAUGUAAAAUAGAUGCCCGUCCACGCAAGAUGCCGCACAAAC--ACACGCACGGCCAGACAAACUGGCGCAGCAUGUGGCCAGCAUUGCACAGGA
...((((((.......((.((((((...(((.......)))...))))))))..((((.((......--...(....)(((((.....))))))).)))).))))))............. ( -33.70)
>DroSim_CAF1 1025 118 + 1
UCAUGGCCAGAACAAAUGAUGUGGAAAUGUAAAAUAGAUGCCCGUCCACGCAAGAUGCCGCACAAAC--AGACUCACGGCCAGACAAACUGGCGCAGCAUGUGGCCAGCACUGCACAGGA
...((((((.......((.((((((...(((.......)))...))))))))..((((.((.....(--........)(((((.....))))))).)))).))))))............. ( -33.20)
>DroEre_CAF1 6447 118 + 1
UCAUGGCCAGAACAAAUGAUGUGGAAAUGUAAAAUAGAUGCCCGUCCAGGCAAGAUGCCGCACAAAC--ACACUCACGGCCAGACAAACUGGCGCAGCAUGUGGCAGCCAAUGCACAGGA
...((((.........((.(.((((...(((.......)))...)))).)))...(((((((.....--.(......)(((((.....)))))......))))))))))).......... ( -28.80)
>DroYak_CAF1 1045 120 + 1
UCAUGGCCAGAACAAAUGAUGUGGAAAUGUAAAAUAGAUGCCCGUCCACGCAAGAUGCCGCACCAACACACACUCACGGCCAGACAAACUGGCGCAGCAUGUGGCCACUACUGCACAGGA
...((((((.......((.((((((...(((.......)))...))))))))..((((.((.........(......)(((((.....))))))).)))).))))))............. ( -33.10)
>consensus
UCAUGGCCAGAACAAAUGAUGUGGAAAUGUAAAAUAGAUGCCCGUCCACGCAAGAUGCCGCACAAAC__ACACUCACGGCCAGACAAACUGGCGCAGCAUGUGGCCAGCACUGCACAGGA
...((((((.......((.((((((...(((.......)))...))))))))..((((.((...........(....)(((((.....))))))).)))).))))))............. (-31.06 = -31.30 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:58 2006