Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,313,157 – 7,313,264 |
Length | 107 |
Max. P | 0.791630 |
Location | 7,313,157 – 7,313,264 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.23 |
Mean single sequence MFE | -35.68 |
Consensus MFE | -26.82 |
Energy contribution | -26.86 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.19 |
Structure conservation index | 0.75 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7313157 107 + 27905053 CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGUA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC-------CAUUGUUCGCGUCGAGUAUUCAAA ....(((((((((..(((((..((((((.(((....------)))((((((.(((((((..((....))..)))))))..))).)))))-------))))...))))).))))).)))). ( -36.10) >DroSec_CAF1 6052 107 + 1 CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC-------CAUUGUUCGCGUCGAGUAUUCAAA ....(((((((((..(((((..((((((.(((....------)))((((((.(((((((..((....))..)))))))..))).)))))-------))))...))))).))))).)))). ( -36.10) >DroSim_CAF1 545 107 + 1 CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC-------CAUUGUUCGCGUCGAGUAUUCAAA ....(((((((((..(((((..((((((.(((....------)))((((((.(((((((..((....))..)))))))..))).)))))-------))))...))))).))))).)))). ( -36.10) >DroEre_CAF1 5962 107 + 1 CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUUGCAGGCACUCUC-------CAUUGUUCGCGCCGAGUAUUCAAA ....(((((((((...((((..((((((.(((....------)))(((((((..(((((..((....))..)))))...)))).)))))-------))))...))))..))))).)))). ( -33.60) >DroYak_CAF1 555 120 + 1 CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCAGUCGCAGUCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCAGGCACUCUCCACUCGCCAUUGUUCGCGCCGAGUAUUCAAA ....(((((((((....((((.((..((((((.((....)).(..((((((((((((((..((....))..))))))).)))).)))..)....))))))..)))))).))))).)))). ( -36.50) >consensus CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA______GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC_______CAUUGUUCGCGUCGAGUAUUCAAA ....(((((((((...((((..((((...(((..........)))((((((..((((((..((....))..))))))...))).))).........))))...))))..))))).)))). (-26.82 = -26.86 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:57 2006