Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,299,004 – 7,299,112 |
Length | 108 |
Max. P | 0.519408 |
Location | 7,299,004 – 7,299,112 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 86.87 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -17.96 |
Energy contribution | -18.44 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.11 |
Mean z-score | -2.05 |
Structure conservation index | 0.64 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7299004 108 - 27905053 GUACA---ACUACUUAUGAAAAUCUAUGCAGAUCAAAUAAUUUUCUGCUUAUUUUCGCCCAGCAUGCCCAGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA ...((---(((((((..((((((....(((((...........)))))..))))))(((((...(((...)))...))))).....)))))))))..(((......))).. ( -34.30) >DroSec_CAF1 20067 111 - 1 AUACAAAAACUGCUUAUGAAAAUGUAUGCAUAUCAAAUAAUUUUCUGCUUAUUUUGGCCCAGCAUGCGCAGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA ..........((((((.....(((....)))(((.......((((((........((((((...(((...)))...))))))))))))((((....))))))))))))).. ( -28.20) >DroSim_CAF1 21473 108 - 1 AUACA---ACUGCUUAUGAAAAUGUAUUCAUAUCAAAUAAUUUUCUGCUUAUUUUCGCCCAGCAUGCGCAGCAAUAUGGGUCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA ...((---(((((.((((((......)))))).........((((((.........(((((...(((...)))...))))).)))))))))))))..(((......))).. ( -26.50) >DroEre_CAF1 20515 105 - 1 AUAUG---A---CUUAUGGAAAUAUGUGCAGAUCAAAUAAUUCUCUAAUUAUUUUCGCCCAGCAUGCACAGCCAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA .....---(---(.(((....))).))((((.............(((((((((((((((((..(((......))).)))))...))))))))))))))))........... ( -24.31) >DroYak_CAF1 25552 105 - 1 AUAAA---A---CUUAUAGAUACAUAUGCAGCUGAAAUAUUUUUCCGCUCAUUUUCGCCCAGCAUGCACGGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA .....---.---..........((..(((((((((((....)))).(((.(((((((((((...(((...)))...)))))...))))))))).)))))))..))...... ( -26.40) >consensus AUACA___ACU_CUUAUGAAAAUAUAUGCAGAUCAAAUAAUUUUCUGCUUAUUUUCGCCCAGCAUGCACAGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA ..............................................(((((...(((((((...(((...)))...))))).......((((....)))))).)))))... (-17.96 = -18.44 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:56 2006