Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,295,126 – 7,295,224 |
Length | 98 |
Max. P | 0.963034 |
Location | 7,295,126 – 7,295,224 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 67.35 |
Mean single sequence MFE | -19.82 |
Consensus MFE | -5.24 |
Energy contribution | -5.43 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -2.65 |
Structure conservation index | 0.26 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7295126 98 + 27905053 CCCGACUAUGGGU-----UUUCCCUGUUUUUAAGCAUACAAAAAAUGCUGCGUAAAUAUGCCAGCAAAAAAU-----UAAAAACAAAAA--AAUUGAAGGGAAAGGAAAA (((......)))(-----((((((((((((((((....)......(((((.(((....)))))))).....)-----))))))).....--......))))))))..... ( -20.80) >DroPse_CAF1 15297 94 + 1 CCGG--AAGGGAAGUAUAUUUUUCU---GUUAAGUAUGCAAAAAAUGCUGCGUAAAUAUGGCAACAAAAAAG-----AAGCAACAAACA--GA----GGCAGCAGCCACA ((..--..))...((((((((....---...)))))))).......(((((.......((....))......-----..((..(.....--).----.)).))))).... ( -22.10) >DroEre_CAF1 16716 86 + 1 CCCGACCAUGGGA-----UUUCCCUGUUUUUAAGCAUGCAAAAAAUGCUGCGUAAAUAUGCCAGCAAAAAAU-----UAA-AACAAAAA--AA----G-------GAAAA (((......))).-----(((((.((((....)))).........(((((.(((....))))))))......-----...-........--..----)-------)))). ( -16.00) >DroYak_CAF1 21584 94 + 1 CCCGACCAUGGGA-----UUUCCCUGUUUUUAAGCAUGCAAAAAAUGCUGCGUAAAUAUGCCAGUAAAAAAU-----UAAAAACAAAAA--AA----GGGGAAAAGAAAA (((......(((.-----...)))(((((((((((((.......)))))((((....))))...........-----))))))))....--..----))).......... ( -21.60) >DroAna_CAF1 16294 100 + 1 CUCAGCCAUGGCA-----U----CCUUUUUUAAGGAUGUAAA-AAUGCUGCGUAAAUAUGCCAGCAAAAAAUGUAUGUAAAAUGAAAAAAAAACAACAUCGAAGAGAGCA (((..(.((((((-----(----((((....))))))))...-..(((((.(((....))))))))..............................))).)..))).... ( -22.70) >DroPer_CAF1 16034 87 + 1 CUGG--AAUGGCAGUAUCUUUUUCU---GUUAAGUAUGCAAAAAAUGCUGCGUAAAUAUGGCAACAAAAAAG-----AAGCAACAAACA--GC----GGCAGC------- (((.--..((...((.(((((((.(---((((..((((((........))))))....)))))...))))))-----).))..))..))--).----......------- ( -15.70) >consensus CCCGACCAUGGGA_____UUUCCCUGUUUUUAAGCAUGCAAAAAAUGCUGCGUAAAUAUGCCAGCAAAAAAU_____UAAAAACAAAAA__AA____GGCGAAA_GAAAA .............................................((((((((....))).)))))............................................ ( -5.24 = -5.43 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:54 2006