Locus 2711

Sequence ID 3R_DroMel_CAF1
Location 7,288,407 – 7,288,515
Length 108
Max. P 0.583758
window4401

overview

Window 1

Location 7,288,407 – 7,288,515
Length 108
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -22.97
Consensus MFE -15.24
Energy contribution -15.38
Covariance contribution 0.14
Combinations/Pair 1.10
Mean z-score -1.54
Structure conservation index 0.66
SVM decision value 0.10
SVM RNA-class probability 0.583758
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7288407 108 + 27905053
AAAGAGG-CUUUGAUCGGCCCUCGGUGGGCAUUAUUAAUAAUGCAAUCAAUUUGUAAACAAUUUGGCAUAUAUCAAUGCGCUUCGUGCUGGCCAUAAAUCUUU-GGGAAA
(((((((-((......))))...(((.(((((.........(((((.....))))).........((((......)))).....))))).))).....)))))-...... ( -25.50)
>DroPse_CAF1 8549 102 + 1
-------CCCCUCUAUGUCUCUCUGUGGGCAUUAUUAAUAAUGCAAUCAAUUUGUAAACAAUUUGGCAUAUAUCAAUGCGCUUCGUGCCGCCCAUAAAUCUCU-GGGAAA
-------.(((............(((((((...........(((((.....)))))........(((((...............)))))))))))).......-)))... ( -22.07)
>DroGri_CAF1 9669 103 + 1
-------CCAGUCUGCUGCUCCCUGUGGGCAUUAUUAAUAAUGUAAUCAAUUUGUAAACAAUUUGGCAUAUAUCAAUGCGCUUCAUGCUGCCCAUAAAUCUCGCACAAAA
-------......((.(((....((((((((................(((.(((....))).)))((((......))))((.....))))))))))......)))))... ( -21.20)
>DroWil_CAF1 11039 105 + 1
AAAGAGG-CUUACAC---UUUUUGGUGGGCAUUAUUAAUAAUGCAAUCAAUUUGUAAACAAUUUGGCAUAUAUCAAUGUGCUUCGUGCUACCCAUAAAUCUCU-GUGAAA
..((((.-.((((((---(....))))(((((.........(((((.....)))))........(((((((....)))))))..))))).....)))..))))-...... ( -22.50)
>DroMoj_CAF1 11314 98 + 1
-------GCUGC-CACCG----CUGUGGGCAUUAUUAAUAAUGUAAUCAAUUUGUAAACAAUUUGGCAUAUAUCAAUGCGCUUCGUGCUGCCCAUAAAUCUCGCAGAAAA
-------.((((-.....----.((((((((................(((.(((....))).)))((((......))))((.....))))))))))......)))).... ( -24.50)
>DroPer_CAF1 9223 102 + 1
-------CCCCUCUAUGUCUCUCUGUGGGCAUUAUUAAUAAUGCAAUCAAUUUGUAAACAAUUUGGCAUAUAUCAAUGCGCUUCGUGCCGCCCAUAAAUCUCU-GGGAAA
-------.(((............(((((((...........(((((.....)))))........(((((...............)))))))))))).......-)))... ( -22.07)
>consensus
_______CCUCUCUACGGCUCUCUGUGGGCAUUAUUAAUAAUGCAAUCAAUUUGUAAACAAUUUGGCAUAUAUCAAUGCGCUUCGUGCUGCCCAUAAAUCUCU_GGGAAA
........................((((((..........((((...(((.(((....))).)))))))........((((...)))).))))))............... (-15.24 = -15.38 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:52 2006