Locus 2710

Sequence ID 3R_DroMel_CAF1
Location 7,282,706 – 7,282,813
Length 107
Max. P 0.516696
window4400

overview

Window 0

Location 7,282,706 – 7,282,813
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 76.64
Mean single sequence MFE -16.70
Consensus MFE -9.73
Energy contribution -10.73
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -1.71
Structure conservation index 0.58
SVM decision value -0.03
SVM RNA-class probability 0.516696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7282706 107 - 27905053
AAACGAAAUGUAAGCACGUAAUGUUCUAAUUUCACGAAGGUGAAUGAAAAUACGUCACUAUGUUUUGGUGAAUAAAAUAAUAGAAUAAUCAUGAUUAAUCAAAUAAU
...(((((((((...(((((...(((....(((((....))))).)))..)))))...)))))))))...............((.((((....)))).))....... ( -20.50)
>DroSim_CAF1 7949 103 - 1
AAACGAAAAGUAAGCACGUAAUGUGCUAAUUUCGCAAAGGUGAAUGAAAAUACGUCACAAUGUUUUGGGGAAUAAAAUAAUAGAAUAAUCAUGAUCAAACAAA----
....((......(((((.....))))).(((((.(((((((((.((......))))))....))))).)))))...............)).............---- ( -15.00)
>DroEre_CAF1 3989 92 - 1
AAGCGAAAAGUAAGCACGUAAUGUGCUAAUUUCUCGAAGGUGAAUGAAAAUACGUCAUGCAAUUUUGAAGAAUAGAAAAAUAUUAUAA---------------UAAU
..((.........))..(((((((.(((.((..((((((.((.((((.......)))).)).))))))..)))))....)))))))..---------------.... ( -14.60)
>consensus
AAACGAAAAGUAAGCACGUAAUGUGCUAAUUUCACGAAGGUGAAUGAAAAUACGUCACAAUGUUUUGGAGAAUAAAAUAAUAGAAUAAUCAUGAU_AA_CAAAUAAU
....((...((((((((.....)))))...(((((....)))))......))).))....(((((((.....)))))))............................ ( -9.73 = -10.73 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:51 2006