Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,064,279 – 1,064,399 |
Length | 120 |
Max. P | 0.720156 |
Location | 1,064,279 – 1,064,399 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -45.12 |
Consensus MFE | -27.29 |
Energy contribution | -27.60 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.34 |
Mean z-score | -2.08 |
Structure conservation index | 0.60 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1064279 120 - 27905053 GGUGAACUGCCGAAGGAGUUUGACUGGAGGCAGAAGGAUGCUGUCACCCAGGUGAAGAAUCAGGGAUCCUGCGGUUCAUGCUGGGCCUUCAGUGUGACCGGCAACAUCGAAGGCCUGUAC .(((((((((...((((...((((....((((......))))))))(((.(((.....))).))).)))))))))))))((.((((((((.((((........)))).)))))))))).. ( -46.90) >DroVir_CAF1 675 120 - 1 GGUGAGCUGCCCAAGGAAUUUGACUGGCGGCAAAAGAAUGCAGUUACGCAUGUCAAGAACCAGGGACAGUGCGGCUCCUGUUGGGCAUUCAGUGUGACCGGCAACAUUGAGGGUGCUUAU .((((((((((((((((...((((((.((.........))))))))((((((((..........)))).))))..))))..))))))((((((((........))))))))...)))))) ( -40.70) >DroGri_CAF1 670 120 - 1 GGUGAGAUGCCCAAGGAGUUUGACUGGCGGCAAAAGAAGGCUGUGACGCAUGUCAAGAAUCAAGGACAAUGCGGCUCCUGCUGGGCAUUCAGUGUUACAGGCAACAUUGAGGGCUUGUAU (.((((.((((((((((((.......(((((........)))))..((((((((..........))).)))))))))))..)))))))))).)..(((((((..........))))))). ( -42.80) >DroYak_CAF1 667 120 - 1 GGUGAACUGCCAAAGGAAUUUGACUGGCGGCAGAAGAAUGCUGUCACCCAGGUAAAAAACCAGGGAUCCUGCGGUUCAUGCUGGGCGUUUAGUGUGACGGGAAACAUUGAAGGUCUGCAC .(((((((((...((((.......((((((((......))))))))(((.(((.....))).))).)))))))))))))((.((((.((((((((........)))))))).)))))).. ( -50.10) >DroMoj_CAF1 691 120 - 1 GGUGAACUGCCCAAGGAAUUCGACUGGAGGGAAAAGAAUGCCGUGACGCAAGUCAAGAACCAAGGCUCGUGCGGCUCCUGCUGGGCAUUCAGCGUGACCGGCAACAUCGAAGGCUUGUAU (((.....)))((((...(((((.((..((((.......((((((((....)))..((.(....).))..)))))))))(((((.(((.....))).)))))..)))))))..))))... ( -37.01) >DroAna_CAF1 672 120 - 1 GGGGAGCUGCCCAAGGAGUUCGAUUGGAGGUCCAAGAAUGCCGUCACCGGAGUGAAGAACCAGGGACAGUGCGGCUCGUGCUGGGCCUUCAGUGUGACGGGCAACAUUGAGGGCCUGUAC ...(((((((.(..((.((((...(((....))).)))).))(((.((.(.((.....))).))))).).)))))))((((.(((((((((((((........))))))))))))))))) ( -53.20) >consensus GGUGAACUGCCCAAGGAAUUUGACUGGAGGCAAAAGAAUGCUGUCACCCAAGUCAAGAACCAGGGACAGUGCGGCUCCUGCUGGGCAUUCAGUGUGACCGGCAACAUUGAAGGCCUGUAC ...((((((((....).......((((.((((......)))).((((....))))....)))).......))))))).(((.((((.((((((((........)))))))).))))))). (-27.29 = -27.60 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:10 2006