Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,282,095 – 7,282,190 |
Length | 95 |
Max. P | 0.909015 |
Location | 7,282,095 – 7,282,190 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 77.40 |
Mean single sequence MFE | -19.23 |
Consensus MFE | -10.34 |
Energy contribution | -12.46 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.38 |
Structure conservation index | 0.54 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7282095 95 + 27905053 AGAGUGUCAGGAAUUACUCACACA-CUCACGCUGGCACUCACACUGGCACUCAAACUCGUACUCACACUCACACUCACACCGAGUGCUGGAAUGCA .(((((((((..............-......)))))))))...(..((((((.............................))))))..)...... ( -24.90) >DroSec_CAF1 3428 77 + 1 AGAGUGGCAGGAAUUACUCACACA-CUC------------ACACUGGCACUCAAACUCGCACUCACACUCACACC------GAGUUCUGGAAUGCA .(((((.(((..............-...------------...))).)))))......(((.((..((((.....------))))....)).))). ( -20.35) >DroSim_CAF1 7372 76 + 1 AGAGUGGCAGGAAUUACUCACACA-CUC------------ACACUGGCACUCAAACUCGCACUCACACUCACACU------CA-CACUGGAAUGCA .(((((.(((..............-...------------...))).)))))......(((.((.((........------..-...)))).))). ( -15.37) >DroEre_CAF1 3399 81 + 1 AGAGUGGCAGGAAUUACUCACACUC---------ACACUCACAGUGGCACUCAAACUCACAUUCGCACUCACACC------GACUGGUGGAAUACA .(((((..((......))..)))))---------.(((.....)))......................((.((((------....))))))..... ( -16.30) >consensus AGAGUGGCAGGAAUUACUCACACA_CUC____________ACACUGGCACUCAAACUCGCACUCACACUCACACC______GAGUGCUGGAAUGCA .(((((.(((.................................))).)))))......(((.((.(((((...........)))))...)).))). (-10.34 = -12.46 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:50 2006