Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,277,999 – 7,278,118 |
Length | 119 |
Max. P | 0.536362 |
Location | 7,277,999 – 7,278,118 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.30 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -24.53 |
Energy contribution | -24.43 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.14 |
Mean z-score | -1.43 |
Structure conservation index | 0.80 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7277999 119 - 27905053 AAUGCUGUUAGAUAGACGGACGGACGGACAGCAAAAAAAAAAAAAAGAAUAGCAAUGGCCCGUUUAAGCGGAAAUUUCUCGGCUAUUUU-GUGUGCGCGGGAAUGUUUGCCGUUCAAUUU ..(((((((.....(.....).....))))))).............(((..((((....((((....))))....((((((((......-....)).))))))...))))..)))..... ( -28.70) >DroSim_CAF1 3262 113 - 1 AAUGCUGUUAGAUG----GACAAACGGCCAGCAAAAAAAGAAAA---AAUUGCAAUGGCCCGUUUAAGCGGAAAUUUCUCGGCUAUUUUGGUGUGCGCGGGAAUGUUUGCCGUUUAAUUU ......((((((((----(.((((((((((((((..........---..))))..)))))(((....))).....(((((((((((....))).)).)))))).)))))))))))))).. ( -33.40) >DroYak_CAF1 4279 107 - 1 AAUGCUGUUAGAUGGACGG--GGAUGGACGGCAAAAA----------AAUUGCAACGGCUCGUUUAAGCGAAAAAUUCUCGGAUAUUUU-GUGUGCGCGGGAAUGUUUGCCGUUCAAUGU ..(.(((((.....)))))--.).(((((((((((..----------..((((((((...))))...))))...(((((((..(((...-..)))..))))))).))))))))))).... ( -30.00) >consensus AAUGCUGUUAGAUGGACGGACGGACGGACAGCAAAAAAA_AAAA___AAUUGCAAUGGCCCGUUUAAGCGGAAAUUUCUCGGCUAUUUU_GUGUGCGCGGGAAUGUUUGCCGUUCAAUUU ..(((((((.................)))))))...............((((.((((((((((....))))....((((((((...........)).)))))).....)))))))))).. (-24.53 = -24.43 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:47 2006