Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,277,443 – 7,277,563 |
Length | 120 |
Max. P | 0.757077 |
Location | 7,277,443 – 7,277,563 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -35.73 |
Consensus MFE | -30.72 |
Energy contribution | -31.83 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.33 |
Structure conservation index | 0.86 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7277443 120 - 27905053 GAUACGCACUGAUCAAACGAUCGAUCGAUCGAUUGCACCGCUCCACCGAAAUGUGGAGCACACGCGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC ....(((.((.(((((.(((((....))))).((((.(((((((((......))))))).(((....))).....))...))))....))))))).(((((....)))))...))).... ( -38.70) >DroSim_CAF1 2501 120 - 1 GAUACGCACUGAUCAAACGAUCGAUCGAUCGAUUGCACCGCUCCACCGAAAUGUGGAACACACGCGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC ....(((.((.(((((.(((((....))))).((((.(((.(((((......)))))...(((....)))...)))....))))....))))))).(((((....)))))...))).... ( -32.60) >DroYak_CAF1 3166 120 - 1 GAUACGCACCGAUCAAGCGAUCGAUCGAUCGAUUGCACCGCUCCCCCAAAAUGUCAAGCACACACGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC ....((((((((....((((((((....))))))))...(((.((((....((.....))(((....)))....)))).)))......)))))...(((((....)))))...))).... ( -35.90) >consensus GAUACGCACUGAUCAAACGAUCGAUCGAUCGAUUGCACCGCUCCACCGAAAUGUGGAGCACACGCGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC ....((((((((.....(((((....))))).((((.(((((((((......))))))).(((....))).....))...))))....)))))...(((((....)))))...))).... (-30.72 = -31.83 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:46 2006