Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,277,082 – 7,277,184 |
Length | 102 |
Max. P | 0.994760 |
Location | 7,277,082 – 7,277,184 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.02 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -15.45 |
Energy contribution | -17.57 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.50 |
Structure conservation index | 0.62 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7277082 102 - 27905053 CACGGGCCACAUAGCCAAUAGCCGGCUAUUAAUAAUUCCAUUGAACUGCACCUGCCAUAAGGUCAAUUGGAUCCGCCGCGGAUCCG----C--------------CCCAUAUCCCCCCAA ...((((...((((((.......)))))).................((.((((......))))))...(((((((...))))))))----)--------------))............. ( -29.50) >DroSim_CAF1 2157 102 - 1 CAUGGGCCACAUAGCCAAUAGCCGGCUAUUAAUAAUUCCAUUGAACUGCACCUGCCAUAAGGUCAAUCGGAUCCGCCGUGGAUCCG----C--------------CCCAUACCCCCCCAA ...((((...((((((.......)))))).................((.((((......))))))...((((((.....)))))))----)--------------))............. ( -28.30) >DroYak_CAF1 2783 112 - 1 -AUGGGCCACAUA-------GCCGGCUAUUAAUAAUUCCAUCGAACUGCACCUGCCAUAAGGUCAAUCGAAUCCGCCAUGCCACCCAUACCCCUAUACCCCUAUACCCACAUACCCGCAU -(((((...(((.-------((.((............)).((((..((.((((......)))))).))))....)).)))...)))))................................ ( -17.50) >consensus CAUGGGCCACAUAGCCAAUAGCCGGCUAUUAAUAAUUCCAUUGAACUGCACCUGCCAUAAGGUCAAUCGGAUCCGCCGUGGAUCCG____C______________CCCAUAUCCCCCCAA ...(((....((((((.......)))))).................((.((((......))))))...(((((((...)))))))....................)))............ (-15.45 = -17.57 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:45 2006