Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,275,893 – 7,276,013 |
Length | 120 |
Max. P | 0.817074 |
Location | 7,275,893 – 7,276,013 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -34.77 |
Consensus MFE | -31.34 |
Energy contribution | -31.23 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.19 |
Structure conservation index | 0.90 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7275893 120 - 27905053 GUCGGUUAUUCUUGCAAUGGAAGUUUGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGUGUUCGUCGCUCCGGCCA .((((((.((((((((.((((.((.((((((((..(..((((...))))..)..)))).)))).(((.....))))).)))))))))))).))))))...((((.....))))....... ( -33.00) >DroSim_CAF1 978 120 - 1 GUCCGUUAUUCCUGCAAUGGAAGUUUGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGUGUUCGUCGCUACGGCCA (.((((..((((((((.((((.((.((((((((..(..((((...))))..)..)))).)))).(((.....))))).)))))))))))).(((.(((......))))))...)))).). ( -31.50) >DroYak_CAF1 1577 120 - 1 GUCGGUUAUUCUUGCAAUGGAGGGUGGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGCGUUCGUCGCUCUGGCCA .((((((.((((((((.((((((...(((((((..(..((((...))))..)..)))).)))..(((.....))).)))))))))))))).))))))...((((.....))))....... ( -39.80) >consensus GUCGGUUAUUCUUGCAAUGGAAGUUUGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGUGUUCGUCGCUCCGGCCA .((((((.((((((((.((((.....(((((((..(..((((...))))..)..)))).)))..(((.....)))...)))))))))))).))))))...((((.....))))....... (-31.34 = -31.23 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:42 2006