Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,275,735 – 7,275,853 |
Length | 118 |
Max. P | 0.978560 |
Location | 7,275,735 – 7,275,853 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.47 |
Mean single sequence MFE | -27.53 |
Consensus MFE | -23.59 |
Energy contribution | -23.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -3.92 |
Structure conservation index | 0.86 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7275735 118 + 27905053 UCGGGGGUCAGAAUGAAAUCCGAAUUCGUUUCAUUCCAUUGCCAUUCCAUGGCCUGGUCCAAAACCAUCCA-ACCCCCUUCGUCGAAGCCCAUCCCU-CCCCCACAUUCACCAUAUUCAU ..((((((..(((((((((........)))))))))....(((((...))))).((((.....))))....-))))))...................-...................... ( -26.30) >DroSim_CAF1 822 120 + 1 UCGGGGGUCAGAAUGAAAUCCGAAUUCGUUUCAUUCCAUUGCCAUUCCAUGGCCUGGUCCAAAACCAUCCAAACCCCCUUCGGCGAAGCACAUCCCAACCCCCACAUCCACCAUACUCAU ..((((((..(((((((((........)))))))))..(((((......(((..((((.....)))).)))..........)))))...........))))))................. ( -29.19) >DroYak_CAF1 1429 112 + 1 UCGGGGGUCAGAAUGAAAUCCGAAUUCGUUUCAUUCCAUUGCCAUUCCAUGGCCUGGUCCAAAACCAGCCAAAAUCCCCUCCUC----CACAUCCU----CCACCAUUCCCCAUAUUCAU ..((((((..(((((((((........))))))))).............((((.((((.....))))))))..)))))).....----........----.................... ( -27.10) >consensus UCGGGGGUCAGAAUGAAAUCCGAAUUCGUUUCAUUCCAUUGCCAUUCCAUGGCCUGGUCCAAAACCAUCCAAACCCCCUUCGUCGAAGCACAUCCC__CCCCCACAUUCACCAUAUUCAU ..((((((..(((((((((........)))))))))....(((((...))))).((((.....)))).....)))))).......................................... (-23.59 = -23.70 + 0.11)
Location | 7,275,735 – 7,275,853 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.47 |
Mean single sequence MFE | -37.23 |
Consensus MFE | -26.40 |
Energy contribution | -27.40 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7275735 118 - 27905053 AUGAAUAUGGUGAAUGUGGGGG-AGGGAUGGGCUUCGACGAAGGGGGU-UGGAUGGUUUUGGACCAGGCCAUGGAAUGGCAAUGGAAUGAAACGAAUUCGGAUUUCAUUCUGACCCCCGA ................((((((-.((((((((.((((((....)....-......((((((..(((.(((((...)))))..)))..))))))....))))).))))))))..)))))). ( -37.60) >DroSim_CAF1 822 120 - 1 AUGAGUAUGGUGGAUGUGGGGGUUGGGAUGUGCUUCGCCGAAGGGGGUUUGGAUGGUUUUGGACCAGGCCAUGGAAUGGCAAUGGAAUGAAACGAAUUCGGAUUUCAUUCUGACCCCCGA ................(((((((..((((...((((...))))(..((((((((.((((((..(((.(((((...)))))..)))..))))))..))))))))..)))))..))))))). ( -44.60) >DroYak_CAF1 1429 112 - 1 AUGAAUAUGGGGAAUGGUGG----AGGAUGUG----GAGGAGGGGAUUUUGGCUGGUUUUGGACCAGGCCAUGGAAUGGCAAUGGAAUGAAACGAAUUCGGAUUUCAUUCUGACCCCCGA .......(((((..((((..----(((((((.----((((......)))).))..)))))..)))).(((((...)))))...((((((((.((....))...))))))))...))))). ( -29.50) >consensus AUGAAUAUGGUGAAUGUGGGGG__GGGAUGUGCUUCGACGAAGGGGGUUUGGAUGGUUUUGGACCAGGCCAUGGAAUGGCAAUGGAAUGAAACGAAUUCGGAUUUCAUUCUGACCCCCGA ..........................................(((((((....(((((...))))).(((((...)))))...((((((((.((....))...))))))))))))))).. (-26.40 = -27.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:41 2006