Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,275,540 – 7,275,656 |
Length | 116 |
Max. P | 0.748659 |
Location | 7,275,540 – 7,275,656 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.76 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -25.70 |
Energy contribution | -25.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.94 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7275540 116 - 27905053 UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGA---AA-AAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU ....(((((((((((((((((.....((........))(((((((---(.-....((((.....(....))))).((((((....)))))).)))))))).))))).)))))).)))))) ( -27.10) >DroSim_CAF1 626 117 - 1 UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGA---AAAAAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU ....(((((((((((((((((.....((........))(((((((---(......((((.....(....))))).((((((....)))))).)))))))).))))).)))))).)))))) ( -27.10) >DroYak_CAF1 1232 120 - 1 UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGAUAGAAAAAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU ....((((((((((((((.......))).........((((.((((((((.....((((.....(....))))).((((((....)))))).)))))))).))))...))))).)))))) ( -27.80) >consensus UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGA___AAAAAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU ....(((((((((((((((((.....((........))(((((((..........((((.....(....))))).((((((....))))))..))))))).))))).)))))).)))))) (-25.70 = -25.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:39 2006