Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,270,002 – 7,270,101 |
Length | 99 |
Max. P | 0.763388 |
Location | 7,270,002 – 7,270,101 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.96 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -22.38 |
Energy contribution | -22.88 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.87 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7270002 99 - 27905053 UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA ((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70) >DroSec_CAF1 6762 99 - 1 UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA ((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70) >DroSim_CAF1 8654 99 - 1 UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA ((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70) >DroEre_CAF1 6745 99 - 1 UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAAUAA ...(((((.((((((((.((..(((((..((((....(....).)))).)))))..)).)))..)))))....(((((........)))))..))))). ( -27.00) >DroYak_CAF1 6906 99 - 1 UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA ((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70) >DroAna_CAF1 7460 97 - 1 CAAUAUUGGCCAAUGGCUGUUGGCCAUAAUUAUACUGGGCGACAGUGAAAUGGUUGACUGCAUAAUUGGAUUAGAGUCCCC--GACGCUGGCAAAACAA ........((((.((((.((..(((((.....(((((.....)))))..)))))..)).))......((((....))))..--..)).))))....... ( -28.20) >consensus UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA ......((((((((....)))))))).........((((.((((.(((..((((((......))))))..))).)))).))))................ (-22.38 = -22.88 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:38 2006